Gene detail

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Gene detail information of Glyur000267s00016673.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32551.1	3.00E-110	LisH dimerisation motif;WD40/YVTN repeat-like-containing domain
NR	XP_006600770.1	0	PREDICTED: transcriptional corepressor LEUNIG-like isoform X2 [Glycine max]
COG	YP_003887875.1	3.00E-31	WD40 repeat-containing protein [Cyanothece sp. PCC 7822]
Swissprot	tr\|Q9FUY2\|LEUNG_ARATH	3.00E-143	Transcriptional corepressor LEUNIG
trEMBL	tr\|I1MUE4\|I1MUE4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G12900.1}

Sequence

Transcript Sequence

>Glyur000267s00016673.1
GTTAGAAGATCCAGGGTTGCAGAACAGGTTAAATACATACATCTACGATTATCTCATGAAGAAACAATTACATGCTACTGCAAGAATATTTCAGAGTGAAGGAAATGTTTCAATGGATCCTTCTGTTATAGACGCACCTAGTGGTTTTCTCCTTGAGTGGTGGACTGTCTTCTGGGACATATTCAGGGCCAAGTGCTCACAGGAACACTCAGAAGAAGCAGAATCATACCTTATGTGCCAACAAATTAAGGCTCGAGAAATGAGGGAGCTTGAAGAGCAAGAGTTTCTGAATCCAAAGCGGATTCAACAAAAGCAAATGCAGTTACCACAGAGGCATACTCTGCAGCAGCAACATGGATGTGGAACTCAAGTTGTTAGCGGCAGTGCTAGCCGTCCTATTAGCAATGATTCTTTGATGAGGCAGAACCAGGCAACTTCTAATGCTATGGAAACTTTAGGACCGGATCCGCTTCGCCCAGGACCTATTCTCCAGAAGAGTAGTTTGATGCAGTCTTCACAATCTTTCAATCAATTTTCACTAAGGCAGCAACTTTTGCTTCAAGCACAACAGAATTTAGTTAATCCATCTGTCAATGATTCTGAGAGCATAGTACTGCTTCTTAACAATCAAAATAAGGGTCACGGGGAAGATGGCCAATCAAACCCTGCAGCAGATTCAATTCCTAATATTGGAATACCTGCACGAATTGGTTCCCCCATATTGCCTCATGCGGACTCAGATGTATTTCTTAAGCAACAAGTTCAAAAGGGTAATCAGCAGCTTCAACAATATTCACCGCATCAACTTTCAAGCCAACAATCTCAGAGTCCCCAGAGGCAAGAAAGTGTTGGTTCTAGAAGCATGAAAGTAGATGGAAGTGTGTCCAGTACCTTGCAAGAAAATGACCAGTGTGTGTGTATGTGTCAATTCAAGGCTTCCGGAAGTCAAATTGGGCGAAAGCAAAAGCCAGCATCATCTCCAGATTCTGCCAATGGCTCTGGATCTACAANCACTGCAGGACCATATGCCATTTCACCTTCAATGCCATCTATGCAAACACCCGGGGATGTGATGACTGAACCAACTCTGCAAGAAAATTTTCCTTTCTCTACATCGTTTTTTATGTTTAGTCCTGCTGGTTTGGGCTCACCTACATCAAGACTGAATCTATTGGCTGATATGGACCACCGTGTGGGTGATGATGCAGCAGACTATAGAGGAAGAGTTGGCANAGGATGCCCATTTAAGGAGGTCAAGCATATAATGGCAAGTTCACATAAAGTTGAGTGTTGTGACTTCTCCTCAGATGGAAAACTGTTTGTTACTGGTGGTCGTGATAAAAAGGCTTCTCTGTGGTGCACAGAATCGTTTAACCTAAAATCTACACTTGAAGAGCACACAAGATGGATAACTGATGTTAGATTTTGTCCAAGCATGTTGTGTGTTGCTACATCCTCAGCTGACAAAACTGTAAGGGTTTGGGATGCTGATAATCCTGGTTATTCTCTTCGAACATTCACAGGACATGCAACACCTGTGATGTCACTAGACTTTCACCCAAGTAAAGACGACCTTATTTGCTCTTGTGCCTATAGGGAAATAAGATACTGGAGTGTTGAAAATGGTAGTTGTGATGGGATTATCAAGGTTGGTGTAACTCAGACGAGATTTCAACCTCGTTTGGGAAGGCTTCTTGCAGCAGTAACAGATAATCACATATCCATTTTTGACGTAGAAACCCTGGATAGGAGACATAGATTGAAGGGCCATGTTAACCCTGTTCGTTCTGTGTGCTGGGATTCTTCTGGAAAATATCTGGCATCTCTTAGTGATGATCTGGTTAAACTCTGGAGTAGCGAAGGGGAATTCATTCACTCATTGCAGGCATTTTCGGACAAAGCCAAGTTCCTGTTCCACACCTGTGCTTTCCATCCTTTCTATCCTGTGCTGCTCCTTGGCTGCCATGAGACTCTTGTGCTGTGGGACTTCGGTCAGAGGAGGGTAAGGACTCTGCCTGCACACGACAAGCGTGTATCTGCCTTGGCAGTATCAAATACTACTGGGTTGGTGGCTTCAGCTAGTCATGACAAGCATTTCAAGATCTGG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00267	100387	106761	+

Gene family

Gene family	subfamily
Transcription Factors Family	LUG
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000267s00016673.1	PF00400.27	WD40	405	434	1.40E-06
Glyur000267s00016673.1	PF00400.27	WD40	440	477	1.40E-11
Glyur000267s00016673.1	PF00400.27	WD40	484	520	0.00048
Glyur000267s00016673.1	PF00400.27	WD40	567	600	1.90E-06
Glyur000267s00016673.1	PF00400.27	WD40	650	684	2.90E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.094
SRR1783600	control	0.102
SRR1783602	moderate drought stress	0.244
SRR1811619	moderate drought stress	0.191

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.309
DRR006520	Root Summer glycyrrhizin high producing strain	0.379
DRR006521	Root Winter glycyrrhizin high producing strain	0.744
DRR006522	Root Winter glycyrrhizin high producing strain	0.702
DRR006523	Root Summer glycyrrhizin low producing strain	3.018
DRR006524	Root Summer glycyrrhizin low producing strain	3.157
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.054
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.088

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.867
SRR2868004	Drought Stress(Tissue:root)	0.803
SRR2967015	Control (Tissue:root)	1.339

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.058
SRR9715740	Leave	0.338
SRR9715741	Leave	0.601
SRR9715739	Root	0.199
SRR9715742	Root	1.182
SRR9715743	Root	0.761

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.316
SRR8749028	MeJA induced 9h	27.482
SRR8749029	MeJA induced 9h	27.930
SRR8749030	Uninduced	3.420
SRR8749031	Uninduced	4.276
SRR8749032	Uninduced	6.762

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.388
SRR8400027	Control-Root	2.308