Gene detail information of Glyur000267s00016680.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08510.11.00E-165fatty acyl-ACP thioesterases B
NRABO38556.10acyl ACP-thioesterase [Arachis hypogaea]
COGYP_003641137.15.00E-26acyl-ACP thioesterase [Thermincola potens JR]
Swissprottr|Q9SQI3|FATB_GOSHI0Palmitoyl-acyl carrier protein thioesterase, chloroplastic (Precursor)
trEMBLtr|A9P5P3|A9P5P3_ARAHY0Putative FatB thioesterase {ECO:0000313|EMBL:AFR54499.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00267156757162393-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10781FATB EC:3.1.2.14 3.1.2.21 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process


molecular_function

GO:0016790  thiolester hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000267s00016680.1PF12590.3Acyl-thio_N11277.60E-55
Glyur000267s00016680.1PF01643.12Acyl-ACP_TE1384021.10E-115


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.981
SRR1783600control22.129
SRR1783602moderate drought stress17.225
SRR1811619moderate drought stress17.046

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.589
DRR006520Root Summer glycyrrhizin high producing strain16.312
DRR006521Root Winter glycyrrhizin high producing strain9.855
DRR006522Root Winter glycyrrhizin high producing strain9.854
DRR006523Root Summer glycyrrhizin low producing strain12.605
DRR006524Root Summer glycyrrhizin low producing strain12.189
DRR006525Leaf Summer glycyrrhizin high producing strain20.766
DRR006526Leaf Summer glycyrrhizin high producing strain20.647

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)43.096
SRR2868004Drought Stress(Tissue:root)38.589
SRR2967015Control (Tissue:root)37.346

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave30.258
SRR9715740Leave35.172
SRR9715741Leave31.309
SRR9715739Root56.693
SRR9715742Root33.746
SRR9715743Root38.675

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h36.245
SRR8749028MeJA induced 9h30.648
SRR8749029MeJA induced 9h27.167
SRR8749030Uninduced14.241
SRR8749031Uninduced9.802
SRR8749032Uninduced11.476

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root56.557
SRR8400027Control-Root61.006

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved