Gene detail

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Gene detail information of Glyur000268s00013363.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G07850.1	4.00E-171	Protein of unknown function (DUF604)
NR	XP_003606544.1	0	Fringe-like protein [Medicago truncatula]
trEMBL	tr\|I1MPH9\|I1MPH9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G29720.1}

Sequence

Transcript Sequence

>Glyur000268s00013363.1
ATGTACTCTTCTTACAAGCAACGTATCATCACTTGGTTCATCCTAATAATGATCGTACTATACATCCTTTACTCTTCCAATCTTATCCTATTAACCAATAAAAAGCGAGATTGCTCCACCTCCGTGCATTTAGATGCCACCACCGAAGAAAAACTTGAGACGAATGGTAATATATCCTCAACTACAGCAATTGTTGAAAATAAAATCGCTAAAGAGAAGAAAATAAGAGAGGTTGAAAAGAAAAAGGAGGAAGAAGTAGAGGAAGAAGAATTGCCCCTTGATCAGTTATCTCAAAGACAGGACACAGAGCTCAAACACATTGTTTTTGGGATAGCCGCTTCATCCAATTTATGGGACATAAGGAAAGAATACATCAAGGTGTGGTGGAAGCCTAATCAAACCAGAGGGGTAGTGTGGTTGGATCAAAGAGTGAGGACTCATGCCAATGAGGGGTTACCAGAGATTCGAATTTCTGGGGACACCACAAAATTCAAATACACGAATACTCAGGGGCAAAGATCTGCTTTGAGGATTTCGAGGGTGGTAACGGAGACATTGAAGCTTGGGATGGAGGATGTGAGATGGTTCATGATGGGAGATGATGACACAGTGTTCATTGTGGATAATGTGATTAGAGTTCTTTCCAAGTACGACCACACTCAGTTCTTTTATGTCGGGAGCTCATCCGAGAGCCATGTTCAGAACATACATTTCTCGTATGCCATGGCATATGGTGGGGGAGGATTTGCTATAAGCTACCCGTTGGCCAAGGAGCTCGCAAAGATGCAGGATCGTTGCATGCAGCGATACCCTGCTTTGTATGGCAGTGATGATAGAATGCAAGCTTGCATGGCTGAGCTGGGGGTGCCATTAACCAAGGAAGCAGGGTTTCACCAGTATGATGTGTATGGGGACCTCTTAGGTCTTCTGGGGGCACATCCTGTGACCCCACTAGTGTCATTGCACCACCTCGATGTAGTGCAACCGATATTCCCAAAGATGAACCGAGTACAATCCTTGCGGCACCTGATGAAATCCGTCAAGCAAGACTCGGGTAGCATAATGCAACAATCAATCTGCTATGACAAAAAAAGATATTGGTCCATCTCTGTTTCATGGGGCTATGTGGTTCAAGTTCTGAGGGGAGTATTGTCCCCTAGAGAGCTAGAGATGCCAACGAGGACCTTTCTCAATTGGTATAGAAGAGCTGACTACACTGCATATGCATTCAACACAAGGCCTGTGACTAAACACCCCTGTCAGAAAGCCTTCCTTTTCTATATGAACAGAACTCGATTCGATCCAGCGAGGAAGCAAATCATTGCTACTTATTCTCGTTACAAATCTAAACCTCCTTTCTGCCGGTGGAAAATGGAGTCACCAGAGGAAATTGATACCGTGATAGTTTCAAAAAGACCAGACCCTCTTCGCTGGCAAAGGTCACCTAGGAGGGATTGTTGTAGAGTTCAGCCATCACGTAAGAGCTCAACTATGTACATATGGGTGGGCAGTTGTGAAGAGGGAGAAGTTAGTGAACTGGTTGAAGGTGGAAACTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00268	47365	49216	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT31

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000268s00013363.1	PF04646.7	DUF604	234	487	7.70E-121

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.447
SRR1783600	control	0.422
SRR1783602	moderate drought stress	0.204
SRR1811619	moderate drought stress	0.243

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.477
DRR006520	Root Summer glycyrrhizin high producing strain	0.461
DRR006521	Root Winter glycyrrhizin high producing strain	0.804
DRR006522	Root Winter glycyrrhizin high producing strain	0.719
DRR006523	Root Summer glycyrrhizin low producing strain	0.214
DRR006524	Root Summer glycyrrhizin low producing strain	0.265
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.120
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.200

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.451
SRR2868004	Drought Stress(Tissue:root)	0.288
SRR2967015	Control (Tissue:root)	0.554

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.150
SRR9715740	Leave	0.103
SRR9715741	Leave	0.006
SRR9715739	Root	0.112
SRR9715742	Root	0.172
SRR9715743	Root	0.039

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.591
SRR8749028	MeJA induced 9h	0.274
SRR8749029	MeJA induced 9h	0.479
SRR8749030	Uninduced	0.672
SRR8749031	Uninduced	0.443
SRR8749032	Uninduced	0.321

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.263
SRR8400027	Control-Root	0.451