Gene detail information of Glyur000268s00013364.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G45780.20phototropin 1
NRXP_004505926.10PREDICTED: phototropin-1-like isoform X1 [Cicer arietinum]
COGNP_419104.23.00E-32sensory box histidine kinase [Caulobacter crescentus CB15]
Swissprottr|O48963|PHOT1_ARATH0Phototropin-1
trEMBLtr|Q5DW44|Q5DW44_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW04141.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002685237864385+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.2.6


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0000160  phosphorelay signal transduction system

GO:0006468  protein phosphorylation

GO:0007165  signal transduction


molecular_function

GO:0000155  phosphorelay sensor kinase activity

GO:0004672  protein kinase activity

GO:0004871  signal transducer activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000268s00013364.1PF13426.1PAS_91622585.10E-21
Glyur000268s00013364.1PF13426.1PAS_94395392.00E-24
Glyur000268s00013364.1PF00069.20Pkinase6289124.30E-62


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.389
SRR1783600control0.363
SRR1783602moderate drought stress0.572
SRR1811619moderate drought stress0.603

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.212
DRR006520Root Summer glycyrrhizin high producing strain3.187
DRR006521Root Winter glycyrrhizin high producing strain1.609
DRR006522Root Winter glycyrrhizin high producing strain1.586
DRR006523Root Summer glycyrrhizin low producing strain0.413
DRR006524Root Summer glycyrrhizin low producing strain0.417
DRR006525Leaf Summer glycyrrhizin high producing strain36.161
DRR006526Leaf Summer glycyrrhizin high producing strain35.680

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.204
SRR2868004Drought Stress(Tissue:root)2.740
SRR2967015Control (Tissue:root)1.878

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave28.153
SRR9715740Leave21.852
SRR9715741Leave41.353
SRR9715739Root0.108
SRR9715742Root0.672
SRR9715743Root0.512

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.295
SRR8749028MeJA induced 9h0.158
SRR8749029MeJA induced 9h0.129
SRR8749030Uninduced0.132
SRR8749031Uninduced0.221
SRR8749032Uninduced0.442

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.236
SRR8400027Control-Root2.100

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved