Gene detail information of Glyur000268s00013368.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G60040.10nuclear RNA polymerase C1
NRXP_004505923.10PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform X1 [Cicer arietinum]
COGYP_008797579.10DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum subterraneum]
Swissprottr|P18616|NRPB1_ARATH0DNA-directed RNA polymerase II subunit 1
trEMBLtr|I1LK95|I1LK95_SOYBN0DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002687172589384-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03018RPC1, POLR3A EC:2.7.7.6 Purine metabolism map00230
Pyrimidine metabolismmap00240
RNA polymerasemap03020
Cytosolic DNA-sensing pathwaymap04623
Epstein-Barr virus infectionmap05169


Gene Ontology

biological_process

GO:0006351  transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0003899  DNA-directed RNA polymerase activity

GO:0008270  zinc ion binding

GO:0032549  ribonucleoside binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000268s00013368.1PF04997.7RNA_pol_Rpb1_1232741.10E-46
Glyur000268s00013368.1PF04997.7RNA_pol_Rpb1_13144005.60E-24
Glyur000268s00013368.1PF00623.15RNA_pol_Rpb1_24025685.80E-67
Glyur000268s00013368.1PF04983.13RNA_pol_Rpb1_35717704.30E-30
Glyur000268s00013368.1PF05000.12RNA_pol_Rpb1_47969011.50E-27
Glyur000268s00013368.1PF04998.12RNA_pol_Rpb1_590813612.00E-94


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.762
SRR1783600control6.852
SRR1783602moderate drought stress9.713
SRR1811619moderate drought stress9.670

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.103
DRR006520Root Summer glycyrrhizin high producing strain6.776
DRR006521Root Winter glycyrrhizin high producing strain7.115
DRR006522Root Winter glycyrrhizin high producing strain6.972
DRR006523Root Summer glycyrrhizin low producing strain6.621
DRR006524Root Summer glycyrrhizin low producing strain6.557
DRR006525Leaf Summer glycyrrhizin high producing strain4.593
DRR006526Leaf Summer glycyrrhizin high producing strain4.552

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.063
SRR2868004Drought Stress(Tissue:root)16.209
SRR2967015Control (Tissue:root)16.186

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.597
SRR9715740Leave7.512
SRR9715741Leave7.310
SRR9715739Root0.666
SRR9715742Root6.308
SRR9715743Root6.267

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.643
SRR8749028MeJA induced 9h16.239
SRR8749029MeJA induced 9h9.963
SRR8749030Uninduced5.204
SRR8749031Uninduced4.325
SRR8749032Uninduced4.464

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.690
SRR8400027Control-Root19.014

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved