Gene detail information of Glyur000268s00013375.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53840.1 | 1.00E-10 | pectin methylesterase 1 |
| NR | XP_003527069.1 | 5.27E-26 | PREDICTED: pectinesterase 3-like [Glycine max] |
| Swissprot | tr|Q43867|PME1_ARATH | 5.00E-12 | Pectinesterase 1 (Precursor) |
| trEMBL | tr|I1KCR5|I1KCR5_SOYBN | 2.00E-26 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G20530.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00268 | 116173 | 116472 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000268s00013375.1 | PF04043.10 | PMEI | 11 | 68 | 3.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.240 |
| SRR1783600 | control | 0.310 |
| SRR1783602 | moderate drought stress | 1.346 |
| SRR1811619 | moderate drought stress | 0.780 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.353 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.514 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.502 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.144 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.182 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.150 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.226 |
| SRR9715741 | Leave | 0.188 |
| SRR9715739 | Root | 0.277 |
| SRR9715742 | Root | 0.209 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.307 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.055 |
| SRR8400027 | Control-Root | 0.058 |