Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000268s00013382.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G46290.1	0	hercules receptor kinase 1
NR	XP_006592253.1	0	PREDICTED: receptor-like protein kinase HERK 1-like isoform X1 [Glycine max]
COG	YP_008151634.1	1.00E-26	hypothetical protein SCE1572_26190 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q9LX66\|HERK_ARATH	0	Receptor-like protein kinase HERK 1 (Precursor)
trEMBL	tr\|I1LR27\|I1LR27_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G07960.1}

Sequence

Transcript Sequence

>Glyur000268s00013382.1
ATGCGTTTGTTCTTCTTCTTTCATCATTTCCATCGAATTCCTTTCGATACAACAAAAGGCGCTCTTCCAAGGAAAAGAAAAGAAAACACATCATTATCAGTGGTTTTCTCTGAATACTTCTTAGACATGTGGGATTGCAGAAAACGTGGCTTATTTATCTGTGCCTTTTCAATCTTGCCCTTGGTATGCTTTTCTGCCAACTTTGTTCCTCTAGACAATTACCTTATAAACTGTGGAGCACCTTCTAATATTTCAATAGATACCCGCAATTTCACAGCTGATAGTTTCTTTAAGAAATTCCTTTCCACCCAACAAGATNTTCTTGCCAGTACCACCTTAAAATCAATCACTTCCTCCAGTGATTCACCTCTCTATCAAACTGCAAGAATTTTCACTGCACACTCAGAGTACACATTTCCTATAAACAGGAAGGGGAGACATTGGATCCGTCTTTATTTCTTCCCATTTGCTTATGAAAAGTACAATCTGAGTGCTGCAAATTTTTCTGTTACCACCCAAAACAGCATCCTTCTCAGTAACTTCAGTGTGCAGAAAAATCCTGTTAAGAAGGAGTACTCGGTGAATGTGACCTCAGACACCCTTGTGATCACTTTTACCCCTTCCAACAGCAATTCCACTGCTTTTGTGAATGCTATTGAAGTTGTTTCAGTCCCTGATGACCTCATTGCGGATGATGCTTCCACCCTGAACCCGCGAGGAAGCTACTCGGGGTTGTTGACACAGGCACTGGAGACAGTTTTCAGGGTTAACATGGGTGGTCCAACTGTCTCCTCTGGCAGTGACCCTCTTCATCGAACATGGGTTCCAGATAAAGGCTTCCTTATACAACCTAACCTGGCCAGTAATTTTTCAAGTATAGGTGCTGTTAAATATGTGGAGGGAGGGCCAACACAAAATACTGCTCCACCAACTGTCTATGGTACACTAACACGGATGAACTCAGACGGTGACCCCCGCAGCAACTTCAATGTGACCTGGCAATTTGATGTGGAACCTGGATTTCAATACCTTGTTCGGCTTCACTTCTGCGACATAGTCAGTAAAAGTCTTAACAATCTCTATTTCAATGTTTACGTTGACTCCTGGTTGGCTGTCAAGGATCTTGATCTCAGTCTGATAAACAATAATGTTTTGGCTGCTCCATATTTCATGGATTTGGTTACAGCCCCGCCTGTCAGCAATAAAATTCTTGTGAGTATTGGCCCTTCTACTCTAAATGGTGATTATCCTAATGCTATTTTGAATGGGCTGGAGATCATGAAGATGAACAACTCCAAGAGCAGTCTCAGTGCATCAATGGCTGTGCCTGTGACTAGTACTCATGGTTCAAATTCTAAGAAAATTGGCATGATAGTGGGTGTGANTCTTGGGGCATTAATTGTAGTGGTTGTGGTTGGAATTTTATTGATACTCTGCAGGAAAAGAAGACGGTTAGCAAAACAAGGACATTCGAAGACATGGGTTCCTTTATCTATCAATGATGGAACTTCTCACACGATGGGAAGTAAATATTCCAATGGCACGACAGCAAGTGCTGCTTCAAACTTTGGGTATCGCATCCCGTTTGTGGCAGTTCAGGAGGCTACAAACAATTTCGATGAGAGTTGGGTTATTGGCATAGGTGGTTTCGGTAAGGTATACAAGGGAGAGTTAAATGATGGCACTAAAGTTGCAGTTAAGAGGGGGAACCCTCGCTCTCAGCAGGGGCTTGCTGAGTTCCGAACTGAAATTGAAATGCTGTCTAAGTTCCGCCATCGCCATCTGGTATCATTGATTGGATATTGTGATGAAAGGAATGAAATGATCCTGATATATGAATACATGGAGAAGGGAACTCTCAAGAGTCATCTGTATGGCTCAGGTCTCCCAAGCTTGAGTTGGAAGGAGAGGCTTGAGATATGCATTGGAGCAGCTAGGGGACTCCATTACCTTCATACCGGCTATGCTAAAGCGGTTATTCACCGTGATGTGAAGTCTGCAAATATCCTGCTTGATGAGAACCTCATGGCCAAAGTTGCTGATTTTGGGCTATCAAAGACTGGGCCGGAAATTGATCAGACGCATGTGAGCACAGCTGTCAAAGGGAGTTTTGGGTACCTTGATCCTGAGTATTTCAGAAGGCAACAATTAACAGAAAAGTCGGACGTGTATTCATTTGGGGTAGTTCTGCTTGAGGTTCTGTGTGCGAGACCCGTTATAGATCCATCCCTTCCCAGAGAAATGGTGAACTTGGCAGAATGGTCAATGAAATGGCTGAAAAGAGGGCAATTGGAGCAAATCATAGACCCAACACTTGCAGGGAAAATCAGGCCAGATTCTCTTAGGAAGTTTGGGGAAACAGCTGAAAAATGTTTGGCTGACTTTGGTATTGACAGGCCTTCTATGGGAGATGTATTGTGGAATTTGGAGTATGCTCTCCAACTCCAAGAGGCTGTTGTTCAAGGTGATCCTGAAGAAAACAGTACCAATATGATCGGCGAACTCTCTCCACAGATCAACAATTTCGACCACGAATCAAGTATTTCTGCAGCACAATTTGAAGCTTCAAGTCTGGATGATCTTTCAGGTGTTTCCATGAGCAAGGTATTCTCACAGCTGGTGAAGTCTGAGGGAAGGTGACTTTGAATATAACATCTGAATCTGCATTATCTTACTTTTGTTTAATGATTTTGGTGGTTTGTCATCTGTACTGTAGTTCTCTGCCCCCTCACAGAGGACTCTGACATTTTACTATAGTTGTAAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00268	131418	134377	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.3.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000268s00013382.1	PF12819.2	Malectin_like	76	429	8.00E-55
Glyur000268s00013382.1	PF07714.12	Pkinase_Tyr	544	736	4.40E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.626
SRR1783600	control	4.603
SRR1783602	moderate drought stress	5.675
SRR1811619	moderate drought stress	5.625

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.431
DRR006520	Root Summer glycyrrhizin high producing strain	3.320
DRR006521	Root Winter glycyrrhizin high producing strain	13.066
DRR006522	Root Winter glycyrrhizin high producing strain	12.916
DRR006523	Root Summer glycyrrhizin low producing strain	10.751
DRR006524	Root Summer glycyrrhizin low producing strain	10.670
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.309
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.298

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	4.074
SRR2868004	Drought Stress(Tissue:root)	4.463
SRR2967015	Control (Tissue:root)	3.840

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	4.464
SRR9715740	Leave	5.311
SRR9715741	Leave	6.120
SRR9715739	Root	1.112
SRR9715742	Root	4.069
SRR9715743	Root	4.219

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.505
SRR8749028	MeJA induced 9h	4.729
SRR8749029	MeJA induced 9h	3.842
SRR8749030	Uninduced	5.368
SRR8749031	Uninduced	5.181
SRR8749032	Uninduced	3.728

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.347
SRR8400027	Control-Root	2.198