Gene detail information of Glyur000268s00013391.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G28630.103-ketoacyl-CoA synthase 12
NRXP_003606593.103-ketoacyl-CoA synthase [Medicago truncatula]
COGYP_003590265.18.00E-13chalcone and stilbene synthase domain-containing protein [Kyrpidia tusciae DSM 2912]
Swissprottr|Q9SIB2|KCS12_ARATH03-ketoacyl-CoA synthase 12 (Precursor)
trEMBLtr|G7JSP5|G7JSP5_MEDTR03-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00268206417207841-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15397KCS EC:2.3.1.199 Fatty acid elongation map00062


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process

GO:0008152  metabolic process

GO:0008610  lipid biosynthetic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0003824  catalytic activity

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000268s00013391.1PF08392.7FAE1_CUT1_RppA253123.50E-108
Glyur000268s00013391.1PF08541.5ACP_syn_III_C3394208.20E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.077
SRR1783600control0.077
SRR1783602moderate drought stress0.000
SRR1811619moderate drought stress0.000

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.023
DRR006520Root Summer glycyrrhizin high producing strain0.099
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.388
DRR006524Root Summer glycyrrhizin low producing strain0.318
DRR006525Leaf Summer glycyrrhizin high producing strain14.200
DRR006526Leaf Summer glycyrrhizin high producing strain14.941

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.311
SRR2868004Drought Stress(Tissue:root)0.273
SRR2967015Control (Tissue:root)0.900

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.149
SRR9715740Leave6.043
SRR9715741Leave5.308
SRR9715739Root0.000
SRR9715742Root0.143
SRR9715743Root0.105

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.437
SRR8749028MeJA induced 9h0.269
SRR8749029MeJA induced 9h0.085
SRR8749030Uninduced0.000
SRR8749031Uninduced0.054
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.287
SRR8400027Control-Root0.460

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved