Gene detail information of Glyur000269s00013896.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G20060.19.00E-58ubiquitin-conjugating enzyme19
NRXP_004511505.11.18E-85PREDICTED: ubiquitin-conjugating enzyme E2 20-like [Cicer arietinum]
COGYP_008797956.15.00E-10ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|Q9LJZ5|UBC19_ARATH2.00E-73Ubiquitin-conjugating enzyme E2 19
trEMBLtr|G7K9A0|G7K9A0_MEDTR2.00E-84Ubiquitin-conjugating enzyme {ECO:0000313|EMBL:AES93925.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002699428296432-


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06688UBE2C, UBC11 EC:2.3.2.23 Ubiquitin mediated proteolysis map04120


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000269s00013896.1PF00179.21UQ_con421482.20E-36


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.237
SRR1783600control3.253
SRR1783602moderate drought stress3.038
SRR1811619moderate drought stress3.179

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.736
DRR006520Root Summer glycyrrhizin high producing strain8.743
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.084
DRR006523Root Summer glycyrrhizin low producing strain2.477
DRR006524Root Summer glycyrrhizin low producing strain2.176
DRR006525Leaf Summer glycyrrhizin high producing strain1.875
DRR006526Leaf Summer glycyrrhizin high producing strain2.053

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.202
SRR2868004Drought Stress(Tissue:root)5.184
SRR2967015Control (Tissue:root)5.467

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.164
SRR9715740Leave0.487
SRR9715741Leave1.621
SRR9715739Root4.420
SRR9715742Root1.245
SRR9715743Root1.672

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.970
SRR8749028MeJA induced 9h9.281
SRR8749029MeJA induced 9h9.156
SRR8749030Uninduced0.141
SRR8749031Uninduced0.000
SRR8749032Uninduced0.695

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.971
SRR8400027Control-Root11.042

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved