Gene detail information of Glyur000269s00013897.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08520.11.00E-154ALBINA 1
NRXP_007158593.10hypothetical protein PHAVU_002G165600g [Phaseolus vulgaris]
COGYP_007109916.10protoporphyrin IX magnesium-chelatase [Geitlerinema sp. PCC 7407]
Swissprottr|O22437|CHLD_PEA0Magnesium-chelatase subunit ChlD, chloroplastic (Precursor)
trEMBLtr|V7CK65|V7CK65_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW30587.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0026997079104983-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03404chlD, bchD EC:6.6.1.1 Porphyrin and chlorophyll metabolism map00860


Gene Ontology

biological_process

GO:0015979  photosynthesis

GO:0015995  chlorophyll biosynthetic process


molecular_function

GO:0005524  ATP binding

GO:0016851  magnesium chelatase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000269s00013897.1PF01078.16Mg_chelatase1972645.50E-07
Glyur000269s00013897.1PF13519.1VWA_25507356.80E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.478
SRR1783600control10.655
SRR1783602moderate drought stress12.156
SRR1811619moderate drought stress11.873

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.834
DRR006520Root Summer glycyrrhizin high producing strain11.610
DRR006521Root Winter glycyrrhizin high producing strain3.011
DRR006522Root Winter glycyrrhizin high producing strain2.952
DRR006523Root Summer glycyrrhizin low producing strain8.229
DRR006524Root Summer glycyrrhizin low producing strain8.252
DRR006525Leaf Summer glycyrrhizin high producing strain74.549
DRR006526Leaf Summer glycyrrhizin high producing strain73.985

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.764
SRR2868004Drought Stress(Tissue:root)11.943
SRR2967015Control (Tissue:root)14.600

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave45.295
SRR9715740Leave51.299
SRR9715741Leave30.834
SRR9715739Root3.924
SRR9715742Root10.808
SRR9715743Root9.806

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.746
SRR8749028MeJA induced 9h8.868
SRR8749029MeJA induced 9h8.386
SRR8749030Uninduced3.150
SRR8749031Uninduced1.345
SRR8749032Uninduced2.534

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.497
SRR8400027Control-Root19.089

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved