Gene detail information of Glyur000269s00013917.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G23860.3 | 4.00E-121 | PHD finger protein-related |
| NR | XP_004511517.1 | 0 | PREDICTED: putative E3 ubiquitin-protein ligase UBR7-like [Cicer arietinum] |
| trEMBL | tr|I1JAE1|I1JAE1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G43520.5} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00269 | 179552 | 185235 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBR_box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000269s00013917.1 | PF02207.15 | zf-UBR | 40 | 105 | 1.90E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 43.962 |
| SRR1783600 | control | 44.428 |
| SRR1783602 | moderate drought stress | 62.624 |
| SRR1811619 | moderate drought stress | 61.963 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 57.528 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 57.187 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 133.810 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 130.403 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 48.555 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 49.460 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 29.495 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.117 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 49.488 |
| SRR2868004 | Drought Stress(Tissue:root) | 52.413 |
| SRR2967015 | Control (Tissue:root) | 56.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 28.542 |
| SRR9715740 | Leave | 37.996 |
| SRR9715741 | Leave | 29.725 |
| SRR9715739 | Root | 20.760 |
| SRR9715742 | Root | 37.495 |
| SRR9715743 | Root | 36.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 83.273 |
| SRR8749028 | MeJA induced 9h | 70.809 |
| SRR8749029 | MeJA induced 9h | 66.066 |
| SRR8749030 | Uninduced | 42.652 |
| SRR8749031 | Uninduced | 52.336 |
| SRR8749032 | Uninduced | 57.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 75.172 |
| SRR8400027 | Control-Root | 71.786 |