Gene detail information of Glyur000269s00013920.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G23850.10AMP-dependent synthetase and ligase family protein
NRXP_003517503.10PREDICTED: long chain acyl-CoA synthetase 4-like [Glycine max]
COGYP_003120813.11.00E-78AMP-dependent synthetase and ligase [Chitinophaga pinensis DSM 2588]
Swissprottr|Q9T0A0|LACS4_ARATH0Long chain acyl-CoA synthetase 4
trEMBLtr|I1JAD2|I1JAD2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G43470.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00269201228209630+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01897ACSL, fadD EC:6.2.1.3 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061
Fatty acid degradationmap00071
Peroxisomemap04146
Quorum sensingmap02024
Adipocytokine signaling pathwaymap04920
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000269s00013920.1PF00501.23AMP-binding535247.80E-92


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control31.194
SRR1783600control31.127
SRR1783602moderate drought stress33.302
SRR1811619moderate drought stress32.875

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain40.509
DRR006520Root Summer glycyrrhizin high producing strain40.372
DRR006521Root Winter glycyrrhizin high producing strain84.045
DRR006522Root Winter glycyrrhizin high producing strain81.757
DRR006523Root Summer glycyrrhizin low producing strain24.549
DRR006524Root Summer glycyrrhizin low producing strain24.783
DRR006525Leaf Summer glycyrrhizin high producing strain40.690
DRR006526Leaf Summer glycyrrhizin high producing strain40.198

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)201.422
SRR2868004Drought Stress(Tissue:root)223.690
SRR2967015Control (Tissue:root)218.490

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave77.104
SRR9715740Leave71.544
SRR9715741Leave98.338
SRR9715739Root13.618
SRR9715742Root52.644
SRR9715743Root45.121

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h67.074
SRR8749028MeJA induced 9h105.055
SRR8749029MeJA induced 9h64.397
SRR8749030Uninduced74.427
SRR8749031Uninduced91.152
SRR8749032Uninduced64.965

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root162.249
SRR8400027Control-Root155.594

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved