Gene detail information of Glyur000269s00013923.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G59220.1 | 1.00E-56 | highly ABA-induced PP2C gene 1 |
NR | XP_004511520.1 | 1.97E-168 | PREDICTED: probable protein phosphatase 2C 8-like [Cicer arietinum] |
COG | YP_003709340.1 | 2.00E-19 | serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044] |
Swissprot | tr|Q5SN75|P2C08_ORYSJ | 5.00E-111 | Probable protein phosphatase 2C 8 |
trEMBL | tr|G7KAL2|G7KAL2_MEDTR | 4.00E-163 | Phosphatase 2C family protein {ECO:0000313|EMBL:AES93958.2} |
Sequence
Transcript Sequence |
---|
Protein Sequence |
---|
Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00269 | 219202 | 220769 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K14497 | PP2C | EC:3.1.3.16 | MAPK signaling pathway - plant | map04016 |
Plant hormone signal transduction | map04075 | |||
Insulin resistance | map04931 |
Gene Ontology
|
Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000269s00013923.1 | PF00481.16 | PP2C | 53 | 323 | 8.70E-61 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 0.018 |
SRR1783600 | control | 0.018 |
SRR1783602 | moderate drought stress | 0.019 |
SRR1811619 | moderate drought stress | 0.008 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 5.377 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 5.734 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 19.939 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 17.179 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 1.360 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 1.231 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.511 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.577 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 0.223 |
SRR2868004 | Drought Stress(Tissue:root) | 0.644 |
SRR2967015 | Control (Tissue:root) | 0.754 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 0.985 |
SRR9715740 | Leave | 0.459 |
SRR9715741 | Leave | 0.408 |
SRR9715739 | Root | 0.093 |
SRR9715742 | Root | 0.273 |
SRR9715743 | Root | 0.173 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 0.589 |
SRR8749028 | MeJA induced 9h | 9.713 |
SRR8749029 | MeJA induced 9h | 1.693 |
SRR8749030 | Uninduced | 4.762 |
SRR8749031 | Uninduced | 1.181 |
SRR8749032 | Uninduced | 1.213 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 0.241 |
SRR8400027 | Control-Root | 0.129 |