Gene detail information of Glyur000270s00013292.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G37850.1 | 2.00E-27 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | AES63595.2 | 1.55E-117 | symbiotic ammonium transporter [Medicago truncatula] |
| Swissprot | tr|Q9T072|BH025_ARATH | 2.00E-40 | Transcription factor bHLH25 |
| trEMBL | tr|G7IFB7|G7IFB7_MEDTR | 6.00E-118 | Symbiotic ammonium transporter {ECO:0000313|EMBL:AES63595.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00270 | 153697 | 156883 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000270s00013292.1 | PF00010.21 | HLH | 186 | 231 | 2.10E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.205 |
| SRR1783600 | control | 4.223 |
| SRR1783602 | moderate drought stress | 7.200 |
| SRR1811619 | moderate drought stress | 7.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.143 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.013 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.213 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.053 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.099 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.117 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.323 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.486 |
| SRR2967015 | Control (Tissue:root) | 3.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.042 |
| SRR9715740 | Leave | 0.393 |
| SRR9715741 | Leave | 0.589 |
| SRR9715739 | Root | 1.304 |
| SRR9715742 | Root | 0.797 |
| SRR9715743 | Root | 1.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.462 |
| SRR8749028 | MeJA induced 9h | 1.822 |
| SRR8749029 | MeJA induced 9h | 3.567 |
| SRR8749030 | Uninduced | 0.146 |
| SRR8749031 | Uninduced | 0.025 |
| SRR8749032 | Uninduced | 0.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.397 |
| SRR8400027 | Control-Root | 6.926 |