Gene detail information of Glyur000271s00015153.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G74910.2 | 0 | ADP-glucose pyrophosphorylase family protein |
| NR | XP_003618380.1 | 0 | Mannose-1-phosphate guanyltransferase alpha-B [Medicago truncatula] |
| COG | NP_560816.1 | 4.00E-30 | mannose-1-phosphate guanylyltransferase [Pyrobaculum aerophilum str. IM2] |
| Swissprot | tr|Q941T9|GMPP2_ORYSJ | 2.00E-51 | Probable mannose-1-phosphate guanylyltransferase 2 |
| trEMBL | tr|G7KJH0|G7KJH0_MEDTR | 0 | Glucose-1-phosphate adenylyltransferase family protein {ECO:0000313|EMBL:AES74598.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00271 | 33445 | 38868 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00966 | GMPP | EC:2.7.7.13 | Fructose and mannose metabolism | map00051 |
| Amino sugar and nucleotide sugar metabolism | map00520 |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000271s00015153.1 | PF00483.18 | NTP_transferase | 10 | 202 | 7.50E-19 |
| Glyur000271s00015153.1 | PF00132.19 | Hexapep | 274 | 307 | 3.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.827 |
| SRR1783600 | control | 17.702 |
| SRR1783602 | moderate drought stress | 21.176 |
| SRR1811619 | moderate drought stress | 21.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.578 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.371 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.396 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.535 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.622 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.315 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.353 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.424 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.139 |
| SRR2967015 | Control (Tissue:root) | 20.202 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.108 |
| SRR9715740 | Leave | 19.863 |
| SRR9715741 | Leave | 16.075 |
| SRR9715739 | Root | 4.913 |
| SRR9715742 | Root | 9.809 |
| SRR9715743 | Root | 7.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.842 |
| SRR8749028 | MeJA induced 9h | 5.838 |
| SRR8749029 | MeJA induced 9h | 4.082 |
| SRR8749030 | Uninduced | 4.782 |
| SRR8749031 | Uninduced | 1.935 |
| SRR8749032 | Uninduced | 2.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 23.352 |
| SRR8400027 | Control-Root | 22.617 |