Gene detail information of Glyur000271s00015156.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G28340.1 | 2.00E-131 | galacturonosyltransferase-like 10 |
| NR | XP_003607050.1 | 0 | Glycosyltransferase CAZy family GT8 [Medicago truncatula] |
| COG | YP_007062961.1 | 3.00E-14 | LPS:glycosyltransferase [Synechococcus sp. PCC 6312] |
| Swissprot | tr|Q9LHD2|GATLA_ARATH | 1.00E-162 | Probable galacturonosyltransferase-like 10 |
| trEMBL | tr|G7KJH6|G7KJH6_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK41069.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00271 | 68199 | 69356 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000271s00015156.1 | PF01501.15 | Glyco_transf_8 | 79 | 342 | 8.80E-64 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.440 |
| SRR1783600 | control | 2.301 |
| SRR1783602 | moderate drought stress | 1.008 |
| SRR1811619 | moderate drought stress | 0.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 116.073 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 114.745 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.505 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.633 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 58.227 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 57.666 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.011 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.299 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 19.091 |
| SRR2868004 | Drought Stress(Tissue:root) | 72.516 |
| SRR2967015 | Control (Tissue:root) | 254.724 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 194.657 |
| SRR9715740 | Leave | 67.358 |
| SRR9715741 | Leave | 151.720 |
| SRR9715739 | Root | 106.210 |
| SRR9715742 | Root | 160.128 |
| SRR9715743 | Root | 149.907 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 194.558 |
| SRR8749028 | MeJA induced 9h | 224.191 |
| SRR8749029 | MeJA induced 9h | 151.306 |
| SRR8749030 | Uninduced | 172.352 |
| SRR8749031 | Uninduced | 174.681 |
| SRR8749032 | Uninduced | 112.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 39.817 |
| SRR8400027 | Control-Root | 78.102 |