Gene detail information of Glyur000271s00015157.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48070.1 | 8.00E-34 | RING/U-box superfamily protein |
| NR | AFK35180.1 | 2.73E-137 | unknown [Lotus japonicus] |
| trEMBL | tr|I3S4I8|I3S4I8_LOTJA | 1.00E-137 | Uncharacterized protein {ECO:0000313|EMBL:AFK35180.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00271 | 72568 | 82804 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000271s00015157.1 | PF14570.1 | zf-RING_4 | 315 | 361 | 4.30E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.451 |
| SRR1783600 | control | 1.296 |
| SRR1783602 | moderate drought stress | 2.332 |
| SRR1811619 | moderate drought stress | 2.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.915 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.185 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.709 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.894 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.175 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.071 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.036 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.439 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.646 |
| SRR2967015 | Control (Tissue:root) | 4.432 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 20.937 |
| SRR9715740 | Leave | 37.512 |
| SRR9715741 | Leave | 16.682 |
| SRR9715739 | Root | 2.726 |
| SRR9715742 | Root | 0.939 |
| SRR9715743 | Root | 1.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.183 |
| SRR8749028 | MeJA induced 9h | 14.102 |
| SRR8749029 | MeJA induced 9h | 9.935 |
| SRR8749030 | Uninduced | 5.706 |
| SRR8749031 | Uninduced | 6.850 |
| SRR8749032 | Uninduced | 6.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.721 |
| SRR8400027 | Control-Root | 4.069 |