Gene detail information of Glyur000271s00015160.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15020.2 | 0 | SIN3-like 2 |
| NR | XP_006603840.1 | 0 | PREDICTED: paired amphipathic helix protein Sin3-like 2-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9LFQ3|SNL2_ARATH | 0 | Paired amphipathic helix protein Sin3-like 2 |
| trEMBL | tr|I1N5Z6|I1N5Z6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G01920.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00271 | 83608 | 94554 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Orphans |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000271s00015160.2 | PF02671.16 | PAH | 89 | 133 | 6.00E-17 |
| Glyur000271s00015160.2 | PF08295.7 | Sin3_corepress | 231 | 326 | 1.70E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.364 |
| SRR1783600 | control | 18.354 |
| SRR1783602 | moderate drought stress | 21.076 |
| SRR1811619 | moderate drought stress | 20.886 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.717 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.436 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 32.506 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 31.548 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.980 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.099 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.990 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.743 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 31.134 |
| SRR2868004 | Drought Stress(Tissue:root) | 41.037 |
| SRR2967015 | Control (Tissue:root) | 40.594 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 20.585 |
| SRR9715740 | Leave | 23.541 |
| SRR9715741 | Leave | 26.906 |
| SRR9715739 | Root | 2.569 |
| SRR9715742 | Root | 22.355 |
| SRR9715743 | Root | 20.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.144 |
| SRR8749028 | MeJA induced 9h | 46.076 |
| SRR8749029 | MeJA induced 9h | 40.057 |
| SRR8749030 | Uninduced | 37.808 |
| SRR8749031 | Uninduced | 71.043 |
| SRR8749032 | Uninduced | 53.756 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 35.614 |
| SRR8400027 | Control-Root | 36.293 |