Gene detail information of Glyur000271s00015162.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G28345.10ABC transporter family protein
NRKHN34172.10ABC transporter B family member 15 [Glycine soja]
COGYP_005367043.14.00E-113efflux ABC transporter permease/ATP-binding protein [Corallococcus coralloides DSM 2259]
Swissprottr|Q9LHD1|AB15B_ARATH0ABC transporter B family member 15
trEMBLtr|I1N5Z8|I1N5Z8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G01940.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00271100115111569-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05658ABCB1, CD243 EC:3.6.3.44 ABC transporters map02010
Bile secretionmap04976
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006810  transport

GO:0055085  transmembrane transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0005524  ATP binding

GO:0016887  ATPase activity

GO:0042626  ATPase activity, coupled to transmembrane movement of substances

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000271s00015162.1PF00664.18ABC_membrane382621.70E-35
Glyur000271s00015162.1PF00005.22ABC_tran3384464.20E-18
Glyur000271s00015162.1PF00664.18ABC_membrane4626922.20E-35
Glyur000271s00015162.1PF00005.22ABC_tran7689175.30E-33
Glyur000271s00015162.1PF00664.18ABC_membrane107811656.90E-07
Glyur000271s00015162.1PF00664.18ABC_membrane116613236.40E-25
Glyur000271s00015162.1PF00005.22ABC_tran140615284.70E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control24.526
SRR1783600control24.589
SRR1783602moderate drought stress58.418
SRR1811619moderate drought stress57.477

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain43.954
DRR006520Root Summer glycyrrhizin high producing strain43.318
DRR006521Root Winter glycyrrhizin high producing strain2.709
DRR006522Root Winter glycyrrhizin high producing strain2.735
DRR006523Root Summer glycyrrhizin low producing strain15.065
DRR006524Root Summer glycyrrhizin low producing strain15.005
DRR006525Leaf Summer glycyrrhizin high producing strain2.752
DRR006526Leaf Summer glycyrrhizin high producing strain2.727

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.769
SRR2868004Drought Stress(Tissue:root)32.563
SRR2967015Control (Tissue:root)12.967

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.595
SRR9715740Leave0.646
SRR9715741Leave1.434
SRR9715739Root5.505
SRR9715742Root34.487
SRR9715743Root29.414

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.891
SRR8749028MeJA induced 9h3.250
SRR8749029MeJA induced 9h1.318
SRR8749030Uninduced8.754
SRR8749031Uninduced8.045
SRR8749032Uninduced3.885

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.229
SRR8400027Control-Root19.827

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved