Gene detail information of Glyur000272s00017861.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G65500.10U-box domain-containing protein kinase family protein
NRXP_006572996.10PREDICTED: putative U-box domain-containing protein 50-like [Glycine max]
COGYP_001957949.19.00E-13hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q9FGD7|PUB50_ARATH0Putative U-box domain-containing protein 50
trEMBLtr|I1J504|I1J504_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G02780.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00272145137151977-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:1.4.1
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation

GO:0016567  protein ubiquitination


molecular_function

GO:0004672  protein kinase activity

GO:0004842  ubiquitin-protein transferase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000272s00017861.1PF07714.12Pkinase_Tyr4636101.00E-21
Glyur000272s00017861.1PF04564.10U-box7287994.90E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.697
SRR1783600control6.646
SRR1783602moderate drought stress12.014
SRR1811619moderate drought stress12.028

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.076
DRR006520Root Summer glycyrrhizin high producing strain5.964
DRR006521Root Winter glycyrrhizin high producing strain20.049
DRR006522Root Winter glycyrrhizin high producing strain19.456
DRR006523Root Summer glycyrrhizin low producing strain8.512
DRR006524Root Summer glycyrrhizin low producing strain8.548
DRR006525Leaf Summer glycyrrhizin high producing strain30.288
DRR006526Leaf Summer glycyrrhizin high producing strain30.308

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.441
SRR2868004Drought Stress(Tissue:root)30.725
SRR2967015Control (Tissue:root)31.992

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave35.981
SRR9715740Leave52.653
SRR9715741Leave44.601
SRR9715739Root2.088
SRR9715742Root9.720
SRR9715743Root8.346

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h52.859
SRR8749028MeJA induced 9h42.839
SRR8749029MeJA induced 9h48.873
SRR8749030Uninduced69.216
SRR8749031Uninduced138.051
SRR8749032Uninduced52.382

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.242
SRR8400027Control-Root20.037

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved