Gene detail information of Glyur000272s00017866.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10520.1 | 5.00E-140 | ROP binding protein kinases 1 |
| NR | KHN38884.1 | 0 | Receptor-like cytosolic serine/threonine-protein kinase RBK1 [Glycine soja] |
| COG | YP_003951720.1 | 3.00E-22 | protein kinase [Stigmatella aurantiaca DW4/3-1] |
| Swissprot | tr|Q8H1D6|RBK1_ARATH | 1.00E-171 | Receptor-like cytosolic serine/threonine-protein kinase RBK1 |
| trEMBL | tr|I1J502|I1J502_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G02750.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00272 | 176111 | 181972 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.10.1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000272s00017866.1 | PF00069.20 | Pkinase | 140 | 402 | 7.90E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.301 |
| SRR1783600 | control | 0.339 |
| SRR1783602 | moderate drought stress | 0.280 |
| SRR1811619 | moderate drought stress | 0.256 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.945 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.958 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.464 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.553 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.708 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.734 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 25.104 |
| SRR2868004 | Drought Stress(Tissue:root) | 28.460 |
| SRR2967015 | Control (Tissue:root) | 31.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.181 |
| SRR9715740 | Leave | 0.266 |
| SRR9715741 | Leave | 1.713 |
| SRR9715739 | Root | 0.412 |
| SRR9715742 | Root | 1.107 |
| SRR9715743 | Root | 1.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.093 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.620 |
| SRR8749030 | Uninduced | 0.239 |
| SRR8749031 | Uninduced | 0.106 |
| SRR8749032 | Uninduced | 0.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.645 |
| SRR8400027 | Control-Root | 2.454 |