Gene detail information of Glyur000273s00014651.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G59980.2 | 4.00E-116 | Polymerase/histidinol phosphatase-like |
| NR | XP_003542823.1 | 0 | PREDICTED: uncharacterized protein LOC100776746 [Glycine max] |
| trEMBL | tr|I1M0S2|I1M0S2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G26680.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00273 | 61066 | 65006 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K03539 | RPP1, RPP30 | EC:3.1.26.5 | RNA transport | map03013 |
| Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000273s00014651.1 | PF01876.11 | RNase_P_p30 | 96 | 246 | 2.80E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.875 |
| SRR1783600 | control | 7.892 |
| SRR1783602 | moderate drought stress | 6.819 |
| SRR1811619 | moderate drought stress | 6.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.443 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.401 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.839 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.382 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.825 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.777 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.750 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.991 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.819 |
| SRR2967015 | Control (Tissue:root) | 7.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.600 |
| SRR9715740 | Leave | 3.499 |
| SRR9715741 | Leave | 4.927 |
| SRR9715739 | Root | 0.638 |
| SRR9715742 | Root | 5.340 |
| SRR9715743 | Root | 4.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.325 |
| SRR8749028 | MeJA induced 9h | 12.877 |
| SRR8749029 | MeJA induced 9h | 6.943 |
| SRR8749030 | Uninduced | 5.223 |
| SRR8749031 | Uninduced | 3.648 |
| SRR8749032 | Uninduced | 3.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.225 |
| SRR8400027 | Control-Root | 7.022 |