Gene detail information of Glyur000273s00014670.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G60170.20RNA binding (RRM/RBD/RNP motifs) family protein
NRXP_003597140.10CCR4-NOT transcription complex subunit [Medicago truncatula]
trEMBLtr|G7IU41|G7IU41_MEDTR0RNA-binding (RRM/RBD/RNP motif) family protein {ECO:0000313|EMBL:AES67391.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00273191409199304-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10643CNOT4, NOT4, MOT2 EC:2.3.2.27 RNA degradation map03018


Gene Ontology

molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000273s00014670.1PF14570.1zf-RING_49611.90E-20
Glyur000273s00014670.1PF00076.17RRM_11121908.30E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.966
SRR1783600control15.041
SRR1783602moderate drought stress15.894
SRR1811619moderate drought stress15.736

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.300
DRR006520Root Summer glycyrrhizin high producing strain17.943
DRR006521Root Winter glycyrrhizin high producing strain21.936
DRR006522Root Winter glycyrrhizin high producing strain21.082
DRR006523Root Summer glycyrrhizin low producing strain17.439
DRR006524Root Summer glycyrrhizin low producing strain17.408
DRR006525Leaf Summer glycyrrhizin high producing strain12.200
DRR006526Leaf Summer glycyrrhizin high producing strain12.204

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)25.553
SRR2868004Drought Stress(Tissue:root)30.074
SRR2967015Control (Tissue:root)28.999

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.168
SRR9715740Leave20.941
SRR9715741Leave22.611
SRR9715739Root4.669
SRR9715742Root18.937
SRR9715743Root16.096

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.653
SRR8749028MeJA induced 9h28.043
SRR8749029MeJA induced 9h13.680
SRR8749030Uninduced20.827
SRR8749031Uninduced19.921
SRR8749032Uninduced15.169

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.587
SRR8400027Control-Root27.128

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved