Gene detail information of Glyur000274s00012546.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G27940.19.00E-19RING/U-box superfamily protein
NRXP_004506089.14.00E-64PREDICTED: RING-H2 finger protein ATL57-like [Cicer arietinum]
Swissprottr|Q9SJJ7|ATL57_ARATH6.00E-25RING-H2 finger protein ATL57
trEMBLtr|A0A072ULK8|A0A072ULK8_MEDTR6.00E-57Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:KEH29943.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00274140526141089+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000274s00012546.1PF13639.1zf-RING_21221652.30E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.611
SRR1783600control2.195
SRR1783602moderate drought stress2.973
SRR1811619moderate drought stress3.288

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.526
DRR006520Root Summer glycyrrhizin high producing strain2.767
DRR006521Root Winter glycyrrhizin high producing strain4.161
DRR006522Root Winter glycyrrhizin high producing strain4.494
DRR006523Root Summer glycyrrhizin low producing strain1.995
DRR006524Root Summer glycyrrhizin low producing strain4.350
DRR006525Leaf Summer glycyrrhizin high producing strain2.531
DRR006526Leaf Summer glycyrrhizin high producing strain2.522

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.253
SRR2868004Drought Stress(Tissue:root)3.206
SRR2967015Control (Tissue:root)2.603

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.158
SRR9715740Leave2.481
SRR9715741Leave1.580
SRR9715739Root2.001
SRR9715742Root2.769
SRR9715743Root2.652

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.229
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.082
SRR8749030Uninduced0.092
SRR8749031Uninduced0.000
SRR8749032Uninduced0.174

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.361
SRR8400027Control-Root2.263

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved