Gene detail information of Glyur000274s00012554.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G44880.10Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain
NRXP_004506081.10PREDICTED: pheophorbide a oxygenase, chloroplastic-like [Cicer arietinum]
COGYP_007108600.11.00E-95Pheophorbide a oxygenase [Geitlerinema sp. PCC 7407]
Swissprottr|Q9FYC2|PAO_ARATH0Pheophorbide a oxygenase, chloroplastic (Precursor)
trEMBLtr|Q0H950|Q0H950_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G08740.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00274170028176178+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13071PAO, ACD1 EC:1.14.15.17 Porphyrin and chlorophyll metabolism map00860


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0010277  chlorophyllide a oxygenase [overall] activity

GO:0016491  oxidoreductase activity

GO:0051537  2 iron, 2 sulfur cluster binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000274s00012554.1PF00355.21Rieske971802.20E-18
Glyur000274s00012554.1PF08417.7PaO3064001.60E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.541
SRR1783600control14.492
SRR1783602moderate drought stress19.147
SRR1811619moderate drought stress19.161

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.781
DRR006520Root Summer glycyrrhizin high producing strain23.770
DRR006521Root Winter glycyrrhizin high producing strain189.993
DRR006522Root Winter glycyrrhizin high producing strain184.940
DRR006523Root Summer glycyrrhizin low producing strain34.001
DRR006524Root Summer glycyrrhizin low producing strain33.665
DRR006525Leaf Summer glycyrrhizin high producing strain45.386
DRR006526Leaf Summer glycyrrhizin high producing strain45.706

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.270
SRR2868004Drought Stress(Tissue:root)6.487
SRR2967015Control (Tissue:root)6.693

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave35.406
SRR9715740Leave40.513
SRR9715741Leave47.229
SRR9715739Root3.826
SRR9715742Root6.816
SRR9715743Root5.964

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.694
SRR8749028MeJA induced 9h29.507
SRR8749029MeJA induced 9h34.816
SRR8749030Uninduced8.316
SRR8749031Uninduced11.362
SRR8749032Uninduced25.681

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.585
SRR8400027Control-Root11.341

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved