Gene detail information of Glyur000274s00012557.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G28190.14.00E-72copper/zinc superoxide dismutase 2
NRXP_003539793.14.76E-118PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic-like [Glycine max]
COGYP_003290884.16.00E-39Superoxide dismutase [Rhodothermus marinus DSM 4252]
Swissprottr|P11964|SODCP_PEA5.00E-112Superoxide dismutase [Cu-Zn], chloroplastic (Precursor)
trEMBLtr|I1LR93|I1LR93_SOYBN2.00E-118Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00274193249197330-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04565SOD1 EC:1.15.1.1 Peroxisome map04146
Longevity regulating pathway - multiple speciesmap04213
Amyotrophic lateral sclerosis (ALS)map05014
Huntington's diseasemap05016
Prion diseasesmap05020


Gene Ontology

biological_process

GO:0006801  superoxide metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004784  superoxide dismutase activity

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000274s00012557.1PF00080.15Sod_Cu592034.00E-49


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control124.931
SRR1783600control125.976
SRR1783602moderate drought stress102.681
SRR1811619moderate drought stress105.810

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain91.278
DRR006520Root Summer glycyrrhizin high producing strain88.529
DRR006521Root Winter glycyrrhizin high producing strain22.887
DRR006522Root Winter glycyrrhizin high producing strain22.365
DRR006523Root Summer glycyrrhizin low producing strain97.528
DRR006524Root Summer glycyrrhizin low producing strain96.402
DRR006525Leaf Summer glycyrrhizin high producing strain36.224
DRR006526Leaf Summer glycyrrhizin high producing strain35.690

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)99.585
SRR2868004Drought Stress(Tissue:root)77.653
SRR2967015Control (Tissue:root)52.548

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave166.137
SRR9715740Leave195.206
SRR9715741Leave124.471
SRR9715739Root104.822
SRR9715742Root88.664
SRR9715743Root88.740

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h25.859
SRR8749028MeJA induced 9h12.063
SRR8749029MeJA induced 9h18.224
SRR8749030Uninduced5.656
SRR8749031Uninduced1.511
SRR8749032Uninduced4.422

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root86.644
SRR8400027Control-Root88.121

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved