Gene detail information of Glyur000274s00012559.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_007132338.1 | 4.51E-24 | hypothetical protein PHAVU_011G086300g [Phaseolus vulgaris] |
| Swissprot | tr|P11964|SODCP_PEA | 5.00E-19 | Superoxide dismutase [Cu-Zn], chloroplastic (Precursor) |
| trEMBL | tr|V7AFG8|V7AFG8_PHAVU | 2.00E-24 | Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00274 | 209850 | 210146 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 120.995 |
| SRR1783600 | control | 115.526 |
| SRR1783602 | moderate drought stress | 96.727 |
| SRR1811619 | moderate drought stress | 84.386 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 70.377 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 70.243 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.279 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.858 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.339 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 40.290 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 45.157 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 43.264 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.967 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.551 |
| SRR2967015 | Control (Tissue:root) | 1.593 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 28.112 |
| SRR9715740 | Leave | 5.378 |
| SRR9715741 | Leave | 14.039 |
| SRR9715739 | Root | 4.786 |
| SRR9715742 | Root | 21.764 |
| SRR9715743 | Root | 16.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.595 |
| SRR8749028 | MeJA induced 9h | 0.152 |
| SRR8749029 | MeJA induced 9h | 0.220 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.663 |
| SRR8400027 | Control-Root | 5.229 |