Gene detail information of Glyur000274s00012560.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G28160.1 | 1.00E-69 | FER-like regulator of iron uptake |
| NR | ACN21642.1 | 6.12E-154 | putative basic helix-loop-helix protein BHLH20 [Lotus japonicus] |
| Swissprot | tr|Q0V7X4|FIT_ARATH | 3.00E-98 | Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR |
| trEMBL | tr|C0JP23|C0JP23_LOTJA | 2.00E-154 | Putative basic helix-loop-helix protein BHLH20 {ECO:0000313|EMBL:ACN21642.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00274 | 210764 | 212040 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000274s00012560.1 | PF00010.21 | HLH | 142 | 185 | 1.10E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.251 |
| SRR1783600 | control | 0.278 |
| SRR1783602 | moderate drought stress | 0.096 |
| SRR1811619 | moderate drought stress | 0.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 30.009 |
| SRR2868004 | Drought Stress(Tissue:root) | 19.616 |
| SRR2967015 | Control (Tissue:root) | 6.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.050 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.180 |
| SRR8749028 | MeJA induced 9h | 5.663 |
| SRR8749029 | MeJA induced 9h | 6.154 |
| SRR8749030 | Uninduced | 1.970 |
| SRR8749031 | Uninduced | 2.341 |
| SRR8749032 | Uninduced | 1.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.480 |
| SRR8400027 | Control-Root | 2.647 |