Gene detail information of Glyur000274s00012561.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G22920.1 | 4.00E-116 | CHY-type/CTCHY-type/RING-type Zinc finger protein |
| NR | AFK44622.1 | 0 | unknown [Lotus japonicus] |
| trEMBL | tr|I3SWI0|I3SWI0_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK44622.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00274 | 214775 | 218078 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10144 | RCHY1, PIRH2 | EC:2.3.2.27 | Ubiquitin mediated proteolysis | map04120 |
| p53 signaling pathway | map04115 | |||
| Measles | map05162 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000274s00012561.1 | PF05495.7 | zf-CHY | 39 | 122 | 1.30E-16 |
| Glyur000274s00012561.1 | PF13639.1 | zf-RING_2 | 174 | 217 | 8.30E-08 |
| Glyur000274s00012561.1 | PF14599.1 | zinc_ribbon_6 | 221 | 281 | 9.40E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.422 |
| SRR1783600 | control | 7.653 |
| SRR1783602 | moderate drought stress | 12.809 |
| SRR1811619 | moderate drought stress | 12.822 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 56.670 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 55.475 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 169.214 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 165.969 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 48.262 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 48.273 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.724 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.714 |
| SRR2868004 | Drought Stress(Tissue:root) | 33.589 |
| SRR2967015 | Control (Tissue:root) | 58.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 22.504 |
| SRR9715740 | Leave | 17.968 |
| SRR9715741 | Leave | 42.007 |
| SRR9715739 | Root | 10.196 |
| SRR9715742 | Root | 27.395 |
| SRR9715743 | Root | 23.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 93.826 |
| SRR8749028 | MeJA induced 9h | 212.934 |
| SRR8749029 | MeJA induced 9h | 233.652 |
| SRR8749030 | Uninduced | 100.069 |
| SRR8749031 | Uninduced | 373.588 |
| SRR8749032 | Uninduced | 220.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.004 |
| SRR8400027 | Control-Root | 8.546 |