Gene detail information of Glyur000274s00012561.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G22920.14.00E-116CHY-type/CTCHY-type/RING-type Zinc finger protein
NRAFK44622.10unknown [Lotus japonicus]
trEMBLtr|I3SWI0|I3SWI0_LOTJA0Uncharacterized protein {ECO:0000313|EMBL:AFK44622.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00274214775218078+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10144RCHY1, PIRH2 EC:2.3.2.27 Ubiquitin mediated proteolysis map04120
p53 signaling pathwaymap04115
Measlesmap05162


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000274s00012561.2PF05495.7zf-CHY39679.30E-09
Glyur000274s00012561.2PF05495.7zf-CHY1071532.20E-06
Glyur000274s00012561.2PF13639.1zf-RING_22052481.00E-07
Glyur000274s00012561.2PF14599.1zinc_ribbon_62523121.10E-29


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.422
SRR1783600control7.653
SRR1783602moderate drought stress12.809
SRR1811619moderate drought stress12.822

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain56.670
DRR006520Root Summer glycyrrhizin high producing strain55.475
DRR006521Root Winter glycyrrhizin high producing strain169.214
DRR006522Root Winter glycyrrhizin high producing strain165.969
DRR006523Root Summer glycyrrhizin low producing strain48.262
DRR006524Root Summer glycyrrhizin low producing strain48.273
DRR006525Leaf Summer glycyrrhizin high producing strain11.724
DRR006526Leaf Summer glycyrrhizin high producing strain11.237

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.714
SRR2868004Drought Stress(Tissue:root)33.589
SRR2967015Control (Tissue:root)58.281

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.504
SRR9715740Leave17.968
SRR9715741Leave42.007
SRR9715739Root10.196
SRR9715742Root27.395
SRR9715743Root23.199

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h93.826
SRR8749028MeJA induced 9h212.934
SRR8749029MeJA induced 9h233.652
SRR8749030Uninduced100.069
SRR8749031Uninduced373.588
SRR8749032Uninduced220.190

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root11.004
SRR8400027Control-Root8.546

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved