Gene detail information of Glyur000275s00017038.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G18650.1 | 3.00E-32 | plasmodesmata callose-binding protein 3 |
| NR | XP_003527110.1 | 4.18E-79 | PREDICTED: glucan endo-1,3-beta-glucosidase-like protein 3-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9FZ86|PDCB3_ARATH | 3.00E-53 | PLASMODESMATA CALLOSE-BINDING PROTEIN 3 (Precursor) |
| trEMBL | tr|K9MBL6|K9MBL6_SOLTU | 1.00E-64 | Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400063348} (Precursor) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00275 | 6647 | 11141 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000275s00017038.1 | PF07983.8 | X8 | 22 | 91 | 2.00E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 96.104 |
| SRR1783600 | control | 96.382 |
| SRR1783602 | moderate drought stress | 116.011 |
| SRR1811619 | moderate drought stress | 115.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 88.422 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 84.907 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.912 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.950 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 82.344 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 81.660 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.353 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 116.022 |
| SRR2868004 | Drought Stress(Tissue:root) | 85.984 |
| SRR2967015 | Control (Tissue:root) | 98.223 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.523 |
| SRR9715740 | Leave | 5.124 |
| SRR9715741 | Leave | 5.722 |
| SRR9715739 | Root | 91.003 |
| SRR9715742 | Root | 54.537 |
| SRR9715743 | Root | 52.906 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.480 |
| SRR8749028 | MeJA induced 9h | 1.546 |
| SRR8749029 | MeJA induced 9h | 3.421 |
| SRR8749030 | Uninduced | 0.809 |
| SRR8749031 | Uninduced | 0.127 |
| SRR8749032 | Uninduced | 1.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 115.167 |
| SRR8400027 | Control-Root | 109.264 |