Gene detail information of Glyur000275s00017045.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G18640.24.00E-1123-phosphoserine phosphatase
NRXP_004499855.10PREDICTED: phosphoserine phosphatase, chloroplastic-like [Cicer arietinum]
COGYP_004916320.11.00E-38phosphoserine phosphatase [Methylomicrobium alcaliphilum 20Z]
Swissprottr|O82796|SERC_ARATH3.00E-141Phosphoserine phosphatase, chloroplastic (Precursor)
trEMBLtr|G7IZA6|G7IZA6_MEDTR0Uncharacterized protein {ECO:0000313|EMBL:AFK47305.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002756177365030+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01079serB, PSPH EC:3.1.3.3 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260


Gene Ontology

biological_process

GO:0006564  L-serine biosynthetic process

GO:0008152  metabolic process


molecular_function

GO:0004647  phosphoserine phosphatase activity

GO:0016791  phosphatase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000275s00017045.1PF12710.2HAD882575.40E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.852
SRR1783600control15.029
SRR1783602moderate drought stress13.262
SRR1811619moderate drought stress13.269

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.683
DRR006520Root Summer glycyrrhizin high producing strain26.271
DRR006521Root Winter glycyrrhizin high producing strain15.007
DRR006522Root Winter glycyrrhizin high producing strain14.973
DRR006523Root Summer glycyrrhizin low producing strain14.761
DRR006524Root Summer glycyrrhizin low producing strain15.014
DRR006525Leaf Summer glycyrrhizin high producing strain11.413
DRR006526Leaf Summer glycyrrhizin high producing strain11.521

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)46.650
SRR2868004Drought Stress(Tissue:root)38.636
SRR2967015Control (Tissue:root)35.366

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.224
SRR9715740Leave23.791
SRR9715741Leave23.542
SRR9715739Root18.142
SRR9715742Root20.043
SRR9715743Root18.226

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h24.009
SRR8749028MeJA induced 9h19.649
SRR8749029MeJA induced 9h14.280
SRR8749030Uninduced15.701
SRR8749031Uninduced4.533
SRR8749032Uninduced7.215

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root46.807
SRR8400027Control-Root51.852

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved