Gene detail information of Glyur000275s00017056.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60970.1 | 2.00E-43 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
| NR | XP_003522291.2 | 3.24E-120 | PREDICTED: transcription factor TCP5-like [Glycine max] |
| Swissprot | tr|Q9FME3|TCP5_ARATH | 5.00E-51 | Transcription factor TCP5 |
| trEMBL | tr|K7KKH4|K7KKH4_SOYBN | 1.00E-120 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G32324.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00275 | 114848 | 116068 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TCP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000275s00017056.1 | PF03634.8 | TCP | 59 | 129 | 2.10E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.030 |
| SRR1783600 | control | 0.030 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.179 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.980 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.001 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.058 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.124 |
| SRR9715740 | Leave | 5.009 |
| SRR9715741 | Leave | 4.752 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.152 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.034 |
| SRR8400027 | Control-Root | 0.028 |