Gene detail

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Gene detail information of Glyur000275s00017060.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G60130.2	7.00E-70	beta glucosidase 16
NR	KEH33175.1	1.17E-129	glycoside hydrolase family 1 protein [Medicago truncatula]
COG	YP_004449345.1	4.00E-45	beta-galactosidase [Haliscomenobacter hydrossis DSM 1100]
Swissprot	tr\|Q7XKV5\|BGL11_ORYSJ	1.00E-80	Beta-glucosidase 11 (Precursor)
trEMBL	tr\|A0A072V4Q7\|A0A072V4Q7_MEDTR	4.00E-130	Glycoside hydrolase family 1 protein {ECO:0000313\|EMBL:KEH33175.1}

Sequence

Transcript Sequence

>Glyur000275s00017060.1
ATGTGGTTAAAGGGCCTTCTTCTTCTGGCTGTTTCCATTAATGCTCTGTTTGAGTCAGTAGCTTCTCTCAACCAAAGCAGTTTCCCTGCAGGTTTTGTATTTGGAACAGCATCTTCAGCTTACCAGATTTCTCAAAAGGGTCAAATTGGGATAGCACTAAATGGTCCCTGGTTTGTGCCACTATCCCAGTCAAAAACTGACAAAGATGGAGCATCCCGGGCCCTGGCTTTTATGTTCATGGAACCGCTACACTCTGGCACNTATCCTACTGTGATGGTTAACAAAGTTGGGGAACGTTTGCCAAATTTTTCCAAAAGACAGTACTTAATGGTTAAAGGGTCCTTTGATTTCATAGGGTTGAACTATTACACAGCATATTATGCAGCCAATATTCCTTGCCAAAGAGGAAATCTAACTATCTTGACAGACTCTTGCACTATGGCTGGCTCAGACTGGCTCTACATCTATCCTCGAGGAATTCAGGATTTATTAGAATACACCAAGGAGAAGTATAACGATCCAACCATTTACATAACAGAAAACGGAGTTGACGAGGTTAATAATGGTACAAAGTCACTTGATGATAAACTGAGAATATACTATATCGGTCAACACCTTTTGTATCTTCAAAGCGCCATAAGGAATGGTGTGAAGGTGAAGGGCTACTTTACGTGGTCATTTTTGGACAACTTTGAGTGGACTAATGGGTACACCGTTCGCTTTGGAATCATTTATGTAGATTTCAAGAATGGTCTGAAAAGATATCATAAAAGATCGGCTTTGTGGTTCAAAACGTTTCTCCGTTTTGCTGAAGAGTATGAAACAGCCTCTATAAAACGAAGCAGCTTTCCAGAGGATTTCATTTTTGGTACATCATCCTCTTCTTATCAGTATGAAGGTGCAGTGAATGAAGAGGGCAGAAGTCCAAGTATTTGGGACACTTTCACTCAAAAATACCCAAATTTTCCATCTCATGGTCTAGGATGCTACCAGAGTACACAAAGGGGACAAATTGGGATTGTTCAAGCTGTGGATTGGGTTATACCATTGTCCCAGTCCAAGGTAGATATTGATGCAGCATCTAGGGTCAATGTTTTCCACTTGGACTGGATGATGGAACCACTAAATTCGGGTTCATACCCGGTTGAAATGGTTCACTATGTGGGAGAAAGGCTGCCAAAGTTTTCTAAAGAGCAATCAGATATGGCTGCCTCAGAATGGATATACCTCTACCCACAAGGAATCGAAGAACTATTGCTTTATGTCAAGAACAAATTCAATNACCCGGTTATATACATAACAGAGAATGGGTATGATGAGTTTAACGATGGAAAAGGATCACTAAAAGACCAAGAGAGAATAGATTGTCACATTCAACATCTATCTTATGTTCACAGTGCTATGTTGAAAGGAGTTGATGTGAGGGGCTACTTTGCATGGTCACTTTTGGACAATTTTGAATGGTCAGACGGTTACACTGTTCGATTTGGGATTGTTTATGTTGATTTTACGGATGGATTAAAGAGGTATCCAAAAGATTCAGCTAAATGGTTTAAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00275	146019	159005	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01188	E3.2.1.21	EC:3.2.1.21	Starch and sucrose metabolism	map00500
			Cyanoamino acid metabolism	map00460
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000275s00017060.1	PF00232.13	Glyco_hydro_1	45	268	5.10E-61
Glyur000275s00017060.1	PF00232.13	Glyco_hydro_1	281	318	8.50E-13
Glyur000275s00017060.1	PF00232.13	Glyco_hydro_1	401	519	9.70E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.021
SRR1783600	control	0.060
SRR1783602	moderate drought stress	0.020
SRR1811619	moderate drought stress	0.017

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.015
DRR006520	Root Summer glycyrrhizin high producing strain	0.138
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.099
DRR006523	Root Summer glycyrrhizin low producing strain	0.070
DRR006524	Root Summer glycyrrhizin low producing strain	0.020
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.116
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.059

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	4.292
SRR2868004	Drought Stress(Tissue:root)	1.799
SRR2967015	Control (Tissue:root)	2.340

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.025
SRR9715740	Leave	0.002
SRR9715741	Leave	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.284
SRR8749028	MeJA induced 9h	0.049
SRR8749029	MeJA induced 9h	0.274
SRR8749030	Uninduced	0.006
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.003

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.169
SRR8400027	Control-Root	0.153