Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000275s00017061.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G44450.1	2.00E-63	beta glucosidase 15
NR	XP_003599013.1	2.32E-144	Beta-glucosidase [Medicago truncatula]
COG	YP_004449345.1	4.00E-48	beta-galactosidase [Haliscomenobacter hydrossis DSM 1100]
Swissprot	tr\|A2SY66\|VICHY_VICSN	1.00E-141	Vicianin hydrolase {ECO:0000312\|EMBL:ABD03937.1} (Precursor; Fragment)
trEMBL	tr\|G7IZC8\|G7IZC8_MEDTR	9.00E-145	Glycoside hydrolase family 1 protein {ECO:0000313\|EMBL:AES69264.1}

Sequence

Transcript Sequence

>Glyur000275s00017061.1
AAGAGTATCAGTGATGAGAGCTACAGTTCCTTCCCTCCTCCTCTGTCTGTTGTCTCTGTTCACCACCCTNTTGGTTGGTGGCAGCACTGGAACTGCATCGCCAAGGGTGGAACCAAGTCACTATGCTGCAGCATTCAACAGAAGCCTTTTCCCTTCTGATTTTGTATTTGGAATAGGTACTTCAGCTTACCAGGTAGAAGGAGCTGCAAATATAGATGAAAAGATTTGGGATCATAGCTCTGGCAATGTAGGAGCTGATTTTTACCACCGTTACAAGGCTCATCAAAAAGGAAAAATCGGAGTCACCTTAGTAACTCACTACTTCGAACCAGTATCTAATAATGTTGCAGATGTCAAGGCTGCAACTCGAGCACTGGAGTTTTTCTTTGGATGGTTCGCCCATCCCATGACATATGGTTACTACCCCCAGAGTATGATATCATCCGTGGGTTATAGGCTCCCCAAATTCACAAAACAACAATCCATAAGTNTCAAAGGTTCCTATGATTTCCTTGGTGTGAATTACTACTCCACATATTTTGCAGAGAGCATTCCACCTACCAGCACCAACATGACCTTCTACACTGATATGCAAGCAAATGTCTCTCCCCTGAGGAAAGGTGTAGCTATTGGCCCTTCGACTGATTTGAACTGGCTCTACATCTATCCCAAGGGAATTCATCACCTTGTGACATACGTAAAGGATAACTACAAGAATCCACCGATGTATATTACTGAAAATGGCGTTGCTGAATCAAGGAATGACTCAATACCAATCAATGTAGCCCGCAAGGATGGTATTAGGATTAGGTACCATGATGGCCATCTCAAACACCTTCTTGAAGGAATCAAAGGTGGTGCTAATGTGAAGGGCTACTATGCATGGTCATTTTCTGACAGCTATGAATGGGATGCTGGCTACACAGTTCGATTTGGAATCATATACGTGGATTACAAGAACAATTTGAGAAGATATCCCAAGTACTCTGCTTTTTGGCTGAAAAAGTTCCTTCTCAAGTGACCCCAATTTTATTTAATTCCCTTTGGCATGCCTAAGATTTTTCCCTTTATTTTAGTCCCTAGAATATCGCCACTGTATCTTACTTGATTCAGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00275	170122	176195	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01188	E3.2.1.21	EC:3.2.1.21	Starch and sucrose metabolism	map00500
			Cyanoamino acid metabolism	map00460
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000275s00017061.1	PF00232.13	Glyco_hydro_1	85	332	3.90E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	213.286
SRR1783600	control	215.366
SRR1783602	moderate drought stress	17.816
SRR1811619	moderate drought stress	17.878

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.570
DRR006520	Root Summer glycyrrhizin high producing strain	18.696
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.071
DRR006524	Root Summer glycyrrhizin low producing strain	1.140
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.120
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.990

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	60.370
SRR2868004	Drought Stress(Tissue:root)	26.560
SRR2967015	Control (Tissue:root)	46.124

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	168.334
SRR9715740	Leave	12.485
SRR9715741	Leave	47.163
SRR9715739	Root	111.888
SRR9715742	Root	135.559
SRR9715743	Root	132.701

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.411
SRR8749028	MeJA induced 9h	1.419
SRR8749029	MeJA induced 9h	0.273
SRR8749030	Uninduced	0.776
SRR8749031	Uninduced	0.288
SRR8749032	Uninduced	0.260

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	121.729
SRR8400027	Control-Root	149.804