Gene detail information of Glyur000275s00017062.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44500.1 | 0 | O-fucosyltransferase family protein |
| NR | XP_004513143.1 | 0 | PREDICTED: uncharacterized protein At1g04910-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 2.00E-50 | Uncharacterized protein At1g04910 |
| trEMBL | tr|V7BVI6|V7BVI6_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW21060.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00275 | 188623 | 192165 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000275s00017062.1 | PF10250.4 | O-FucT | 192 | 493 | 3.20E-57 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.769 |
| SRR1783600 | control | 3.944 |
| SRR1783602 | moderate drought stress | 2.841 |
| SRR1811619 | moderate drought stress | 3.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.106 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.946 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.956 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.114 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.401 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.452 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.499 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.421 |
| SRR2868004 | Drought Stress(Tissue:root) | 24.168 |
| SRR2967015 | Control (Tissue:root) | 18.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.534 |
| SRR9715740 | Leave | 9.793 |
| SRR9715741 | Leave | 12.351 |
| SRR9715739 | Root | 6.090 |
| SRR9715742 | Root | 20.593 |
| SRR9715743 | Root | 15.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.428 |
| SRR8749028 | MeJA induced 9h | 53.158 |
| SRR8749029 | MeJA induced 9h | 42.050 |
| SRR8749030 | Uninduced | 92.325 |
| SRR8749031 | Uninduced | 35.804 |
| SRR8749032 | Uninduced | 22.914 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.077 |
| SRR8400027 | Control-Root | 11.457 |