Gene detail information of Glyur000276s00017151.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40390.1 | 0 | Raffinose synthase family protein |
| NR | XP_003601214.1 | 0 | Galactinol-sucrose galactosyltransferase [Medicago truncatula] |
| COG | YP_004464004.1 | 2.00E-44 | raffinose synthase [Mahella australiensis 50-1 BON] |
| Swissprot | tr|Q8VWN6|RFS_PEA | 0 | Galactinol--sucrose galactosyltransferase |
| trEMBL | tr|G7J4U7|G7J4U7_MEDTR | 0 | Galactinol-raffinose galactosyltransferase {ECO:0000313|EMBL:AES71465.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00276 | 18824 | 23662 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH36 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K06617 | E2.4.1.82 | EC:2.4.1.82 | Galactose metabolism | map00052 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000276s00017151.1 | PF05691.7 | Raffinose_syn | 25 | 577 | 9.20E-277 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.457 |
| SRR1783600 | control | 0.425 |
| SRR1783602 | moderate drought stress | 0.767 |
| SRR1811619 | moderate drought stress | 0.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.211 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.257 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.299 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.293 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.389 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.372 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.041 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.677 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.881 |
| SRR2967015 | Control (Tissue:root) | 0.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.451 |
| SRR9715740 | Leave | 0.499 |
| SRR9715741 | Leave | 0.208 |
| SRR9715739 | Root | 1.187 |
| SRR9715742 | Root | 3.175 |
| SRR9715743 | Root | 2.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.517 |
| SRR8400027 | Control-Root | 3.412 |