Gene detail information of Glyur000276s00017156.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G63090.4 | 6.00E-58 | Lateral organ boundaries (LOB) domain family protein |
| NR | KHN30941.1 | 2.87E-98 | Protein LATERAL ORGAN BOUNDARIES [Glycine soja] |
| Swissprot | tr|Q9FML4|LOB_ARATH | 1.00E-71 | Protein LATERAL ORGAN BOUNDARIES |
| trEMBL | tr|I1JXA7|I1JXA7_SOYBN | 2.00E-97 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G36080.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00276 | 49087 | 49668 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000276s00017156.1 | PF03195.9 | DUF260 | 12 | 110 | 2.30E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.243 |
| SRR1783600 | control | 1.097 |
| SRR1783602 | moderate drought stress | 2.120 |
| SRR1811619 | moderate drought stress | 2.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.186 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.370 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.147 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.187 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.190 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.190 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.649 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.948 |
| SRR2967015 | Control (Tissue:root) | 0.845 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.573 |
| SRR9715740 | Leave | 0.141 |
| SRR9715741 | Leave | 0.180 |
| SRR9715739 | Root | 4.500 |
| SRR9715742 | Root | 1.582 |
| SRR9715743 | Root | 0.823 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.105 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.090 |
| SRR8400027 | Control-Root | 0.778 |