Gene detail information of Glyur000276s00017160.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G42490.10Copper amine oxidase family protein
NRXP_004501882.10PREDICTED: copper methylamine oxidase-like [Cicer arietinum]
COGYP_007125935.10Copper amine oxidase domain-containing protein [Gloeocapsa sp. PCC 7428]
Swissprottr|Q43077|AMO_PEA5.00E-69Primary amine oxidase (Precursor)
trEMBLtr|G7J4S8|G7J4S8_MEDTR0Copper amine oxidase, enzyme domain protein {ECO:0000313|EMBL:AES71446.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0027696469102904-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00276AOC3, AOC2, tynA EC:1.4.3.21 Glycine, serine and threonine metabolism map00260
Tyrosine metabolismmap00350
Phenylalanine metabolismmap00360
beta-Alanine metabolismmap00410
Isoquinoline alkaloid biosynthesismap00950
Tropane, piperidine and pyridine alkaloid biosynthesismap00960


Gene Ontology

biological_process

GO:0009308  amine metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005507  copper ion binding

GO:0008131  primary amine oxidase activity

GO:0048038  quinone binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000276s00017160.1PF02727.11Cu_amine_oxidN2801251.10E-06
Glyur000276s00017160.1PF02728.11Cu_amine_oxidN32053085.40E-34
Glyur000276s00017160.1PF01179.15Cu_amine_oxid3337577.60E-152


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.601
SRR1783600control18.947
SRR1783602moderate drought stress16.694
SRR1811619moderate drought stress16.970

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.205
DRR006520Root Summer glycyrrhizin high producing strain11.815
DRR006521Root Winter glycyrrhizin high producing strain5.864
DRR006522Root Winter glycyrrhizin high producing strain5.788
DRR006523Root Summer glycyrrhizin low producing strain11.096
DRR006524Root Summer glycyrrhizin low producing strain11.675
DRR006525Leaf Summer glycyrrhizin high producing strain2.645
DRR006526Leaf Summer glycyrrhizin high producing strain2.872

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)51.089
SRR2868004Drought Stress(Tissue:root)54.102
SRR2967015Control (Tissue:root)60.200

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.673
SRR9715740Leave8.134
SRR9715741Leave23.505
SRR9715739Root5.183
SRR9715742Root14.426
SRR9715743Root12.935

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.014
SRR8749028MeJA induced 9h23.671
SRR8749029MeJA induced 9h10.891
SRR8749030Uninduced39.983
SRR8749031Uninduced25.601
SRR8749032Uninduced12.511

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root56.973
SRR8400027Control-Root55.512

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved