Gene detail information of Glyur000277s00017304.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G20280.1 | 2.00E-113 | Zinc finger C-x8-C-x5-C-x3-H type family protein |
| NR | XP_007157380.1 | 0 | hypothetical protein PHAVU_002G065400g [Phaseolus vulgaris] |
| Swissprot | tr|Q0JHZ2|C3H11_ORYSJ | 2.00E-164 | Zinc finger CCCH domain-containing protein 11 |
| trEMBL | tr|V7CGW8|V7CGW8_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW29374.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00277 | 3608 | 7811 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 40.794 |
| SRR1783600 | control | 40.239 |
| SRR1783602 | moderate drought stress | 42.422 |
| SRR1811619 | moderate drought stress | 41.760 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 78.308 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 77.910 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 50.241 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 49.199 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 63.563 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 64.848 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 39.450 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 38.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 80.179 |
| SRR2868004 | Drought Stress(Tissue:root) | 70.152 |
| SRR2967015 | Control (Tissue:root) | 62.576 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 75.938 |
| SRR9715740 | Leave | 95.573 |
| SRR9715741 | Leave | 85.992 |
| SRR9715739 | Root | 8.660 |
| SRR9715742 | Root | 42.594 |
| SRR9715743 | Root | 41.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 63.731 |
| SRR8749028 | MeJA induced 9h | 61.920 |
| SRR8749029 | MeJA induced 9h | 45.211 |
| SRR8749030 | Uninduced | 39.537 |
| SRR8749031 | Uninduced | 38.050 |
| SRR8749032 | Uninduced | 36.902 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 74.461 |
| SRR8400027 | Control-Root | 72.583 |