Gene detail information of Glyur000277s00017307.4 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G09600.1 | 5.00E-49 | Homeodomain-like superfamily protein |
| NR | KHN39115.1 | 5.91E-103 | Transcription factor ASG4 [Glycine soja] |
| Swissprot | tr|Q8RWU3|RVE8_ARATH | 6.00E-75 | Protein REVEILLE 8 |
| trEMBL | tr|I1L8Q9|I1L8Q9_SOYBN | 4.00E-99 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G05560.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00277 | 33193 | 38646 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000277s00017307.4 | PF00249.26 | Myb_DNA-binding | 44 | 88 | 6.80E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.238 |
| SRR1783600 | control | 8.267 |
| SRR1783602 | moderate drought stress | 11.047 |
| SRR1811619 | moderate drought stress | 11.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.767 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.692 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.212 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.938 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.492 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.114 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.922 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.308 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.278 |
| SRR2967015 | Control (Tissue:root) | 3.954 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 70.459 |
| SRR9715740 | Leave | 65.636 |
| SRR9715741 | Leave | 64.375 |
| SRR9715739 | Root | 4.529 |
| SRR9715742 | Root | 9.214 |
| SRR9715743 | Root | 6.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.256 |
| SRR8749028 | MeJA induced 9h | 7.914 |
| SRR8749029 | MeJA induced 9h | 6.157 |
| SRR8749030 | Uninduced | 0.435 |
| SRR8749031 | Uninduced | 0.271 |
| SRR8749032 | Uninduced | 0.305 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.608 |
| SRR8400027 | Control-Root | 9.359 |