Gene detail information of Glyur000277s00017310.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G45630.13.00E-115RNA binding (RRM/RBD/RNP motifs) family protein
NRXP_004497456.10PREDICTED: putative uncharacterized protein DDB_G0277255-like isoform X1 [Cicer arietinum]
trEMBLtr|I1L8R3|I1L8R3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G05590.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002775094959236-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10643CNOT4, NOT4, MOT2 EC:2.3.2.27 RNA degradation map03018


Gene Ontology

molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000277s00017310.1PF14570.1zf-RING_410621.10E-20
Glyur000277s00017310.1PF13893.1RRM_51321949.60E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.644
SRR1783600control7.721
SRR1783602moderate drought stress9.224
SRR1811619moderate drought stress9.362

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.370
DRR006520Root Summer glycyrrhizin high producing strain11.251
DRR006521Root Winter glycyrrhizin high producing strain8.048
DRR006522Root Winter glycyrrhizin high producing strain7.929
DRR006523Root Summer glycyrrhizin low producing strain8.667
DRR006524Root Summer glycyrrhizin low producing strain8.584
DRR006525Leaf Summer glycyrrhizin high producing strain9.563
DRR006526Leaf Summer glycyrrhizin high producing strain9.567

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.680
SRR2868004Drought Stress(Tissue:root)16.678
SRR2967015Control (Tissue:root)16.564

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.578
SRR9715740Leave11.292
SRR9715741Leave8.452
SRR9715739Root1.679
SRR9715742Root6.662
SRR9715743Root5.885

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.656
SRR8749028MeJA induced 9h10.384
SRR8749029MeJA induced 9h5.608
SRR8749030Uninduced4.178
SRR8749031Uninduced3.242
SRR8749032Uninduced2.618

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.556
SRR8400027Control-Root21.922

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved