Gene detail information of Glyur000277s00017313.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G02880.10ubiquitin-protein ligase 4
NRXP_004497459.10PREDICTED: E3 ubiquitin-protein ligase UPL4-like isoform X1 [Cicer arietinum]
Swissprottr|Q9LYZ7|UPL4_ARATH0E3 ubiquitin-protein ligase UPL4
trEMBLtr|K7LZL3|K7LZL3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G19981.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002778609396346+


Gene family

Gene familysubfamily
Ubiquitin FamilyHECT


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10590TRIP12 EC:2.3.2.26 Ubiquitin mediated proteolysis map04120


Gene Ontology

molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000277s00017313.1PF00632.20HECT120615561.40E-89


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.101
SRR1783600control10.124
SRR1783602moderate drought stress10.405
SRR1811619moderate drought stress10.438

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.546
DRR006520Root Summer glycyrrhizin high producing strain15.183
DRR006521Root Winter glycyrrhizin high producing strain17.706
DRR006522Root Winter glycyrrhizin high producing strain17.209
DRR006523Root Summer glycyrrhizin low producing strain15.624
DRR006524Root Summer glycyrrhizin low producing strain15.727
DRR006525Leaf Summer glycyrrhizin high producing strain8.708
DRR006526Leaf Summer glycyrrhizin high producing strain8.481

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.633
SRR2868004Drought Stress(Tissue:root)24.894
SRR2967015Control (Tissue:root)24.716

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.186
SRR9715740Leave9.881
SRR9715741Leave12.045
SRR9715739Root3.133
SRR9715742Root14.552
SRR9715743Root12.699

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.397
SRR8749028MeJA induced 9h25.785
SRR8749029MeJA induced 9h12.516
SRR8749030Uninduced11.405
SRR8749031Uninduced17.802
SRR8749032Uninduced13.059

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.604
SRR8400027Control-Root18.844

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved