Gene detail information of Glyur000278s00017278.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G46210.1 | 0 | cullin4 |
| NR | KHN47328.1 | 0 | Cullin-4 [Glycine soja] |
| Swissprot | tr|Q8LGH4|CUL4_ARATH | 0 | Cullin-4 |
| trEMBL | tr|I1K3E9|I1K3E9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G27240.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00278 | 31378 | 41443 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | Cullin |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000278s00017278.2 | PF00888.17 | Cullin | 56 | 442 | 2.90E-104 |
| Glyur000278s00017278.2 | PF00888.17 | Cullin | 443 | 540 | 2.80E-27 |
| Glyur000278s00017278.2 | PF10557.4 | Cullin_Nedd8 | 569 | 632 | 4.30E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.872 |
| SRR1783600 | control | 3.817 |
| SRR1783602 | moderate drought stress | 6.574 |
| SRR1811619 | moderate drought stress | 6.427 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.085 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.938 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.821 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.814 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.514 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.292 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.531 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.687 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.854 |
| SRR2967015 | Control (Tissue:root) | 5.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.765 |
| SRR9715740 | Leave | 1.612 |
| SRR9715741 | Leave | 2.007 |
| SRR9715739 | Root | 0.304 |
| SRR9715742 | Root | 1.392 |
| SRR9715743 | Root | 1.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.253 |
| SRR8749028 | MeJA induced 9h | 6.144 |
| SRR8749029 | MeJA induced 9h | 12.452 |
| SRR8749030 | Uninduced | 18.566 |
| SRR8749031 | Uninduced | 10.179 |
| SRR8749032 | Uninduced | 9.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.643 |
| SRR8400027 | Control-Root | 4.811 |