Gene detail information of Glyur000278s00017280.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G30100.1 | 0 | nine-cis-epoxycarotenoid dioxygenase 5 |
| NR | XP_004504912.1 | 0 | PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like, partial [Cicer arietinum] |
| COG | YP_007064275.1 | 4.00E-95 | 9-cis-epoxycarotenoid dioxygenase [Calothrix sp. PCC 7507] |
| Swissprot | tr|Q9C6Z1|NCED5_ARATH | 0 | Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic (Precursor) |
| trEMBL | tr|Q8LP15|Q8LP15_PEA | 0 | Nine-cis-epoxycarotenoid dioxygenase3 {ECO:0000313|EMBL:BAC10551.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00278 | 60578 | 62407 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K09840 | NCED | EC:1.13.11.51 | Carotenoid biosynthesis | map00906 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000278s00017280.1 | PF03055.10 | RPE65 | 132 | 602 | 2.80E-131 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.724 |
| SRR1783600 | control | 0.656 |
| SRR1783602 | moderate drought stress | 1.320 |
| SRR1811619 | moderate drought stress | 1.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.561 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.683 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.668 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.153 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.449 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.447 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.375 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.471 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.654 |
| SRR2967015 | Control (Tissue:root) | 1.987 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 24.589 |
| SRR9715740 | Leave | 1.738 |
| SRR9715741 | Leave | 5.194 |
| SRR9715739 | Root | 41.475 |
| SRR9715742 | Root | 29.792 |
| SRR9715743 | Root | 28.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.331 |
| SRR8749028 | MeJA induced 9h | 0.037 |
| SRR8749029 | MeJA induced 9h | 0.022 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.847 |
| SRR8400027 | Control-Root | 5.707 |