Gene detail information of Glyur000278s00017282.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G34590.11.00E-180Transketolase family protein
NRXP_004504563.10PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [Cicer arietinum]
COGNP_680995.10pyruvate dehydrogenase E1 component beta subunit [Thermosynechococcus elongatus BP-1]
Swissprottr|O64688|ODPB3_ARATH0Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic (Precursor)
trEMBLtr|I1KRU1|I1KRU1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G10200.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002788231085905-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00162PDHB, pdhB EC:1.2.4.1 Carbon metabolism map01200
Glycolysis / Gluconeogenesismap00010
Citrate cycle (TCA cycle)map00020
Pyruvate metabolismmap00620
HIF-1 signaling pathwaymap04066
Glucagon signaling pathwaymap04922
Central carbon metabolism in cancermap05230


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000278s00017282.1PF02779.19Transket_pyr902608.40E-48
Glyur000278s00017282.1PF02780.15Transketolase_C2763941.30E-34


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.468
SRR1783600control18.516
SRR1783602moderate drought stress17.038
SRR1811619moderate drought stress16.973

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.165
DRR006520Root Summer glycyrrhizin high producing strain17.805
DRR006521Root Winter glycyrrhizin high producing strain6.837
DRR006522Root Winter glycyrrhizin high producing strain6.753
DRR006523Root Summer glycyrrhizin low producing strain15.616
DRR006524Root Summer glycyrrhizin low producing strain15.685
DRR006525Leaf Summer glycyrrhizin high producing strain31.489
DRR006526Leaf Summer glycyrrhizin high producing strain31.163

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)66.895
SRR2868004Drought Stress(Tissue:root)34.747
SRR2967015Control (Tissue:root)38.051

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave44.579
SRR9715740Leave42.532
SRR9715741Leave35.042
SRR9715739Root37.204
SRR9715742Root21.842
SRR9715743Root24.140

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h37.469
SRR8749028MeJA induced 9h17.146
SRR8749029MeJA induced 9h21.031
SRR8749030Uninduced11.065
SRR8749031Uninduced7.780
SRR8749032Uninduced8.089

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root64.812
SRR8400027Control-Root66.878

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved