Gene detail information of Glyur000278s00017284.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G30135.1 | 9.00E-06 | jasmonate-zim-domain protein 8 |
| NR | NP_001236696.1 | 2.81E-22 | uncharacterized protein LOC100500349 [Glycine max] |
| Swissprot | tr|Q8LBM2|TIF5A_ARATH | 1.00E-07 | Protein TIFY 5A |
| trEMBL | tr|C6T1G4|C6T1G4_SOYBN | 1.00E-22 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G29070.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00278 | 93424 | 93603 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Orphans |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000278s00017284.1 | PF09425.5 | CCT_2 | 37 | 58 | 9.30E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.127 |
| SRR1783602 | moderate drought stress | 0.207 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.251 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.778 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.061 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.373 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.040 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.822 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.564 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 28.182 |
| SRR9715740 | Leave | 1.544 |
| SRR9715741 | Leave | 13.480 |
| SRR9715739 | Root | 2.162 |
| SRR9715742 | Root | 4.581 |
| SRR9715743 | Root | 3.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.657 |
| SRR8749031 | Uninduced | 0.344 |
| SRR8749032 | Uninduced | 2.930 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.937 |
| SRR8400027 | Control-Root | 0.810 |