Gene detail information of Glyur000278s00017285.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G14420.27.00E-163Aldolase-type TIM barrel family protein
NRCDX97546.10BnaA05g25330D [Brassica napus]
COGYP_003890366.13.00E-105FMN-dependent alpha-hydroxy acid dehydrogenase [Cyanothece sp. PCC 7822]
Swissprottr|Q9LRR9|GLO1_ARATH0Peroxisomal (S)-2-hydroxy-acid oxidase GLO1
trEMBLtr|A0A078E8P8|A0A078E8P8_BRANA0BnaA05g25330D protein {ECO:0000313|EMBL:CDX97546.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00278104575115601-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11517HAO EC:1.1.3.15 Carbon metabolism map01200
Glyoxylate and dicarboxylate metabolismmap00630
Peroxisomemap04146


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0010181  FMN binding

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000278s00017285.1PF01070.13FMN_dh283471.90E-123
Glyur000278s00017285.1PF01070.13FMN_dh3686969.00E-124


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control57.821
SRR1783600control58.125
SRR1783602moderate drought stress62.402
SRR1811619moderate drought stress62.013

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain40.120
DRR006520Root Summer glycyrrhizin high producing strain39.460
DRR006521Root Winter glycyrrhizin high producing strain128.405
DRR006522Root Winter glycyrrhizin high producing strain125.533
DRR006523Root Summer glycyrrhizin low producing strain45.942
DRR006524Root Summer glycyrrhizin low producing strain45.622
DRR006525Leaf Summer glycyrrhizin high producing strain3.672
DRR006526Leaf Summer glycyrrhizin high producing strain3.455

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)42.753
SRR2868004Drought Stress(Tissue:root)69.699
SRR2967015Control (Tissue:root)53.686

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.239
SRR9715740Leave1.332
SRR9715741Leave2.535
SRR9715739Root43.051
SRR9715742Root44.554
SRR9715743Root46.838

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h42.335
SRR8749028MeJA induced 9h39.898
SRR8749029MeJA induced 9h44.681
SRR8749030Uninduced106.868
SRR8749031Uninduced180.198
SRR8749032Uninduced132.279

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root75.405
SRR8400027Control-Root76.520

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved