Gene detail information of Glyur000278s00017292.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G46180.1 | 2.00E-152 | ornithine-delta-aminotransferase |
| NR | XP_004504557.1 | 0 | PREDICTED: ornithine aminotransferase, mitochondrial-like [Cicer arietinum] |
| COG | YP_001741215.1 | 4.00E-116 | putative ornithine/acetylornithine/succinyldiaminopimelate aminotransferase (ornithine/acetylornithine/succinyldiaminopimelate transaminase) (dapC-like) [Candidatus Cloacimonas acidaminovorans str. Evry] |
| Swissprot | tr|Q9FNK4|OAT_ARATH | 0 | Ornithine aminotransferase, mitochondrial (Precursor) |
| trEMBL | tr|B1A0U3|B1A0U3_PEA | 0 | Ornithine aminotransferase {ECO:0000313|EMBL:ABZ10818.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00278 | 139418 | 143697 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00819 | rocD, OAT | EC:2.6.1.13 | Arginine and proline metabolism | map00330 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000278s00017292.1 | PF00202.16 | Aminotran_3 | 3 | 259 | 5.20E-88 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 102.499 |
| SRR1783600 | control | 103.064 |
| SRR1783602 | moderate drought stress | 101.425 |
| SRR1811619 | moderate drought stress | 100.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 178.569 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 176.639 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 142.851 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 137.804 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 256.878 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 259.923 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.210 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 84.044 |
| SRR2868004 | Drought Stress(Tissue:root) | 108.231 |
| SRR2967015 | Control (Tissue:root) | 126.149 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 27.697 |
| SRR9715740 | Leave | 29.072 |
| SRR9715741 | Leave | 34.375 |
| SRR9715739 | Root | 52.674 |
| SRR9715742 | Root | 68.782 |
| SRR9715743 | Root | 62.833 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 91.484 |
| SRR8749028 | MeJA induced 9h | 111.400 |
| SRR8749029 | MeJA induced 9h | 89.734 |
| SRR8749030 | Uninduced | 78.944 |
| SRR8749031 | Uninduced | 69.156 |
| SRR8749032 | Uninduced | 87.697 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 110.946 |
| SRR8400027 | Control-Root | 120.792 |