Gene detail information of Glyur000278s00017293.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G18390.2 | 7.00E-30 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
| NR | XP_007025032.1 | 1.13E-123 | Teosinte branched 1, putative isoform 4, partial [Theobroma cacao] |
| Swissprot | tr|Q93V43|TCP2_ARATH | 4.00E-63 | Transcription factor TCP2 |
| trEMBL | tr|A0A061GKS6|A0A061GKS6_THECC | 4.00E-124 | Teosinte branched 1, putative isoform 4 {ECO:0000313|EMBL:EOY27654.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00278 | 146043 | 155604 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TCP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000278s00017293.2 | PF03634.8 | TCP | 68 | 233 | 2.20E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.289 |
| SRR1783600 | control | 10.380 |
| SRR1783602 | moderate drought stress | 6.594 |
| SRR1811619 | moderate drought stress | 6.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.274 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.153 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.021 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.903 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.668 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.336 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.123 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.590 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.393 |
| SRR2967015 | Control (Tissue:root) | 15.132 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 27.956 |
| SRR9715740 | Leave | 33.374 |
| SRR9715741 | Leave | 34.315 |
| SRR9715739 | Root | 1.283 |
| SRR9715742 | Root | 6.550 |
| SRR9715743 | Root | 5.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.001 |
| SRR8749029 | MeJA induced 9h | 0.005 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.034 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.122 |
| SRR8400027 | Control-Root | 2.708 |